Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1106 ATGGAAAACTCAGACACCTCAGAGACTTCATATTCTCTCCCCAGTCTCTTGTGCCAGGAAAATGAAGCTTGCTTTGGGGAGGAAGAACAGGACCAGTATATGAACTTGGACCCATGTCTTTTCTCCCAATCAGAGGATGAATATATACAAAGTTTGGTCAAAAGAGAAACTAAAAGCACTATGTCTTCTGATAATCGCTCAATCACCAACCAAAGCTGGCTGAAACGGGCTCGCCTGGACTCCATCAAATGGGTTCTCAATACTAGAGCGTTCTTTGGGTTTCAGTACCGTACAGCATACCTATGTGTGGCTTATTTCGATCTCTTTCTTTCTAGGCGATCCATTGATAACGAGAGGTTTTGGGCTACTGGACTGTTATCAGTGGCATGTTTATCATTGGCGGCCAAAATGGAAGAGCTCAGAGTACCAAACCTGTCTGAATTTCCGGTTGAAGGCTACTATTTCGATAACAAGGTGATTCGGAGAATGGAGTTGATGGTTTTGGAAACTTTGGAATGGAAAATGCTTTCCATCACTCCTTTTGATTTTATCCCATGCTTCATCAACAAATTTTGTGGTGAATCCAAATCAAAAGAATTGGTATCTAGAACCATGGAACTCCTTCTGGCTATAACAAGAGAGGTTAACTTGATGGATCATCGGCCTTCAGTGATTGCTGCAGCTGCAGTGTTAGCTGCCTTTGATGGTCAATTAACTAGGAAAACAATGGATTGCAAGATGAGTGTGATCTCATTATGGGGTTCTCGAGAAAATGAGCACATCTTTTCCTGTTATAGGCTTCTGCAGGAAATAGAGATGGGAAAATCCAAGACACCCAAACAACTGATATCCCCAAATTTGTCATTATCAGATAATTCCAGCTCTATTGATGTTGATGAGAGTTCTTTCACTTCTGCTGTTGGTTCTAAGAGGAGACTCATATACAATGACTGTGATGAAGTTTGCCAGTCTGCTAAAATTTGTCATCGATGA 993 0.4139 MENSDTSETSYSLPSLLCQENEACFGEEEQDQYMNLDPCLFSQSEDEYIQSLVKRETKSTMSSDNRSITNQSWLKRARLDSIKWVLNTRAFFGFQYRTAYLCVAYFDLFLSRRSIDNERFWATGLLSVACLSLAAKMEELRVPNLSEFPVEGYYFDNKVIRRMELMVLETLEWKMLSITPFDFIPCFINKFCGESKSKELVSRTMELLLAITREVNLMDHRPSVIAAAAVLAAFDGQLTRKTMDCKMSVISLWGSRENEHIFSCYRLLQEIEMGKSKTPKQLISPNLSLSDNSSSIDVDESSFTSAVGSKRRLIYNDCDEVCQSAKICHR* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1106 330 PANTHER CYCLINS 45 273 IPR039361 -
Vvi7g1106 330 FunFam Cyclin-D5-1 177 265 - -
Vvi7g1106 330 Gene3D - 50 245 - -
Vvi7g1106 330 SMART Cyclin_C_2 178 307 IPR004367 -
Vvi7g1106 330 SMART cyclin_7 182 270 IPR013763 -
Vvi7g1106 330 SMART cyclin_7 83 169 IPR013763 -
Vvi7g1106 330 Pfam Cyclin, N-terminal domain 49 175 IPR006671 -
Vvi7g1106 330 Gene3D - 62 176 - -
Vvi7g1106 330 FunFam Cyclin-D5-1 73 176 - -
Vvi7g1106 330 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Vvi7g1106 330 CDD CYCLIN_AtCycD-like_rpt1 77 173 - -
Vvi7g1106 330 Pfam Cyclin, C-terminal domain 178 287 IPR004367 -
Vvi7g1106 330 SUPERFAMILY Cyclin-like 37 175 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1106 Vvi-Chr7 15472852 15474259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1106 12 258 Core Cell Cycle Gene Families AT4G37630 40.000 7.25e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1106 K18811 - vvi:100854424 644.039