Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1098 ATGGGGAAGAAACAACACAGCAAAGATCGCATGTTCATAACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAATCCAAAAACGCCTCCGTCCCTTTCAAACGCCTCCCCTTCTACTGCTGCGCGGTCACGTTTACGCCGTTTGGGGATCCGGTGTGCACCAGAGATGGCACCGTCTTCGACATTATGAACATAATTCCGTACATTAGGAAGTTTGGTAAACATCCTGTTACTGGGGCTCCACTCAAGCAAGAGGATCTCATTCCACTTACTTTCCACAAGAATTCAGATGGTATATTTCCTTTTTCAATTTTTGTTTCTTGA 327 0.474 MGKKQHSKDRMFITKTEWATEWGGAKSKNASVPFKRLPFYCCAVTFTPFGDPVCTRDGTVFDIMNIIPYIRKFGKHPVTGAPLKQEDLIPLTFHKNSDGIFPFSIFVS* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1098 108 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Vvi7g1098 108 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Vvi7g1098 108 Pfam U-box domain 39 91 IPR003613 GO:0004842|GO:0016567
Vvi7g1098 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Vvi7g1098 108 CDD RING-Ubox_PPIL2 38 99 IPR026951 -
Vvi7g1098 108 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Vvi7g1098 108 SUPERFAMILY RING/U-box 37 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1098 Vvi-Chr7 15400077 15400608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1098 1 101 U-box Gene Family AT5G67530 80.198 4.39e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1098 K10598 - vvi:104879909 233.417