Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1096 ATGGAAAGCTATTTGGACGAGAACTTCTCAGGAGTGAAGCCAAAGCATTCGTCGGATGAGGTGTTGCAGAGATGGAGGAATCTTTGCAGTGTTGTCAAGAACCCCAAGCGAAGGTTCCGCTTCACTGCCAACCTCTCCAAGCGTGGCGAGGCGGCTGCTATGCGCCGCACCAATCAGGAGAAATTGAGAATTGCGGTATTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGTAAAGAAGCTGAAAATTCATGGTGGGGTAGATGGTATTGCAGAAAAGCTATCCACAAGTACAACCAATGGGCTTACTGCCGACAATAAATTGCTGAATCACAGACAAGAGATTTATGGGATAAATAAATTCACTGAAACTCAAGCTCGAGGCTTCTTGGTATTTGTTTGGGAAGCCCTTCATGACATGACACTCATAATCCTTGCTGTGTGTGCGCTTGTGTCTCTGATAGTTGGCATTGCAATGGAAGGGTGGCCGGTGGGGGCCCATGATGGCCTTGGGATTGTTGCTAGTATCTTGTTGGTTGTGTTAGTCACGGCAACAAGTGATTATCGGCAATCTTTACAGTTTAGGGATTTGGACAAAGAGAAGAAGAAGATCTCCATTCAGGTCACAAGGAATGGATATAGGCACAAAATGTCGATATATGATTTGCTTCCTGGTGATATTGTGCATCTTTCTATTGGAGACCAGGTCCCTGCTGATGGACTTTTTGTTTCAGGATTTTGTGTGTCAATTGATGAATCAAGTTTAACTGGAGAGAGTGAACCGGTAATGGTGGCTAAAGAGAGTGCTGATGTAATAATCTTGGATGATAATTTCTCCACAATTGCGACTGTGGCCAAATGGGGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGGAAATGCTCCCCTCACGGCTGTTCAGCTTCTGTGGGTCAACATGATCATGGATACACTGGGAGCTCTTGCATTAGCAACCGAGCCACCTACTGATGACTTAATGAAGAGAGCACCAGTTGGAAGAAGAGGAAATTTTATCAGTAATGTCATGTGGAGAAATATCCTAGGCCAGTCCCTATATCAGTTTCTGGTAATATGGTATCTTCAGGTAGAAGGGAAAGCAATATTTCAGCTCAATGGCCCTGATTCTGATCTGATCCTGAATACACTTATTTTCAACTCGTTTGTCTTCTGCCAGGTTTTCAATGAGATAAGCTCCCGAGAAATGGAGAAAATCAATGTATTCAAAGGCATACTGGATAACTATGTATTTGCTGCTGTTCTCACTTCCACTGTCCTTTTCCAGATCATAATCATCGAGTACCTGGGTACATATGCAAACACATCACCTCTCACTCTATCTCAATGGTTCCTCAGTGTTTTTATTGGGTTCCTAGGCATGCCAATCGCTGCGGCCTTAAAGATGATCCCTGTGGCAAGTCAATGA 1608 0.4335 MESYLDENFSGVKPKHSSDEVLQRWRNLCSVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKLRIAVLVSKAAFQFIQGVPVSDYVVPEEIKAAGFQICADELGSIVEGHDVKKLKIHGGVDGIAEKLSTSTTNGLTADNKLLNHRQEIYGINKFTETQARGFLVFVWEALHDMTLIILAVCALVSLIVGIAMEGWPVGAHDGLGIVASILLVVLVTATSDYRQSLQFRDLDKEKKKISIQVTRNGYRHKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFCVSIDESSLTGESEPVMVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRGNFISNVMWRNILGQSLYQFLVIWYLQVEGKAIFQLNGPDSDLILNTLIFNSFVFCQVFNEISSREMEKINVFKGILDNYVFAAVLTSTVLFQIIIIEYLGTYANTSPLTLSQWFLSVFIGFLGMPIAAALKMIPVASQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1096 535 FunFam Calcium-transporting ATPase 17 77 - -
Vvi7g1096 535 Gene3D - 141 295 - -
Vvi7g1096 535 FunFam Calcium-transporting ATPase 290 534 - -
Vvi7g1096 535 SUPERFAMILY Calcium ATPase, transduction domain A 239 299 IPR008250 -
Vvi7g1096 535 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Vvi7g1096 535 Gene3D - 168 223 - -
Vvi7g1096 535 Gene3D - 297 532 - -
Vvi7g1096 535 PANTHER CATION TRANSPORTING ATPASE 297 532 - -
Vvi7g1096 535 SMART Cation_ATPase_N_a_2 116 190 IPR004014 -
Vvi7g1096 535 Pfam Cation transporting ATPase, C-terminus 356 530 IPR006068 -
Vvi7g1096 535 Pfam Cation transporter/ATPase, N-terminus 118 185 IPR004014 -
Vvi7g1096 535 Gene3D - 17 77 - -
Vvi7g1096 535 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 531 IPR023298 -
Vvi7g1096 535 Pfam E1-E2 ATPase 237 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1096 Vvi-Chr7 15390669 15395581 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1096 297 532 Primary Pumps ATPases AT4G37640 83.475 5.21e-137 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1096 K01537 - vvi:100854234 588.571