Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1088 ATGGATACCTTGTTTAGACTAGTCAGTCTTCAATCCGATCAATCCTACAACTCCAGTAGAACTTCTAGCAGCTCTAGATCTTCTAGACAAAACCATCACCACCACCACCAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTCTCTTCTTCTTCTTCCAAGCACTACTATCCTTATCAGCAACAAACCCATCCTTCCACCACCACCACCCCCACCACCACCAACACCAGCACTCCTACTCATCATGCCTTTGAGCCCACCGAATTCTCTTTCTCCCCTGCCCGTGATCTCCACCTAGAATTCAACTCTTCTGCTTCCGGCAAGTGGGCTTCCGAAATCCTCCTGGAGACAGCACGAGCCATCGCTGATAAGAACAGCGCTCGCGTTCAACAACTCATGTGGATGCTCAACGAACTTAGCTCTCCTTATGGCGACACCGATCAGAAGCTCGCTGCTTACTTCCTTCAAGCCTTGTTTAGCCGCATGACCGACTCGGGTGAGAGGTGTTACCGGACTTTAATATCCGCATCGGAGAAGACTTGCTCATTCGAATCCACCAGAAAAATGGTATTGAAATTTCAAGAGGTGAGCCCTTGGACCACGTTTGGACATGTAGCTTGTAATGGTGCAATCATGGAAGCTCTTGAAGGCGAGAGCAAGCTCCATATAATTGATATAAGCAACACCTACTGCACTCAGTGGCCTACCTTGCTCGAAGCCCTAGCCACCCGCACTGACGAGACCCCTCACCTCCGTCTCACCACCGTCGTCACAAGCAAAGCCGGCACCGGAGGGATGGCACCAGTGCAAAAACTGATGAAAGAGATTGGAAACAGAATGGAAAAGTTCGCTAGGCTCATGGGTGTGCCCTTCAAATTCAACGTACTGCACCACTCCGGCGACCTATCCCATCTGAATTTAGCAGAATTGGACATCAAAGACGACGAGGCACTCGCAGTAAACTGCGTCGGCGCGTTGCACTCAGTCACCGCATTCGGTAACCGCCGAGACATCGTCGTATCATCTTTCCGGAGATTGCATCCGAGGATCATCACCGTCGTGGAAGAAGAAGCTGATCTCGATGTGGGCGTGGATGGGTTCGACTTCGTCAAAGGTTTTCAGGAATGCTTAAGATGGTTTAGGGTTTACTTGGAGTCATTAGACGAGAGCTTCCCTCGCACTAGCAACGAGCGCCTCATGCTCGAACGCGCCGCCGGACGCGCAATCGTCGACCTGGTGGCTTGCCCGCCGTCGGAGTCGATCGAACGGCGCGAGACGGCCACGCGCTGGTCTCAGCGGCTCCATGCAAGCGGGTTCTCTCCGGTGTCGTTTAGCGATGAAGTATGCGATGACGTACGTGCTCTCCTGAGGAGATACAAGGAGGGTTGGTCAATGACACAGTCCTCCGACGCCGGAATATTCCTCTCATGGAAAGACCAGCCGGTGGTGTGGACCAGTGCATGGAAACCTTGA 1485 0.5199 MDTLFRLVSLQSDQSYNSSRTSSSSRSSRQNHHHHHQEDEECFNFFMDEEDFSSSSSKHYYPYQQQTHPSTTTTPTTTNTSTPTHHAFEPTEFSFSPARDLHLEFNSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAGTGGMAPVQKLMKEIGNRMEKFARLMGVPFKFNVLHHSGDLSHLNLAELDIKDDEALAVNCVGALHSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRALLRRYKEGWSMTQSSDAGIFLSWKDQPVVWTSAWKP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1088 494 ProSiteProfiles GRAS family profile. 105 493 IPR005202 -
Vvi7g1088 494 MobiDBLite consensus disorder prediction 56 87 - -
Vvi7g1088 494 Pfam GRAS domain family 116 493 IPR005202 -
Vvi7g1088 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 486 IPR005202 -
Vvi7g1088 494 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1088 Vvi-Chr7 15325228 15326712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1088 1 494 GRAS Transcription Factor Family AT4G37650 62.360 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi7g1088 GRAS 2.7e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1088 - - vvi:100263197 875.159