Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1085 ATGGAGGATCCCACCTTCATACATCAGTACAGCCCGATGCAGTCTCTTGGTGACTCGCTTGATGAGTTCGATTTCAAGTCCTTTTCTTCTGAGAACTTCTCATCTTACCCATCTACCAGTCCCAAAAGCAGCAACCCCCACTTGTTCGATTCAATCATTGAAAATTTTCAGACAGGAGGAGTAGAGAGGCCAAGAAAACAGCTCAAGACCGCTAGTGGGAAGTTTTGCCCCACGGGATCCAAAACTCTCGAAGCTTCTTCATCTTCCTCCTCCTACCTGATTTCTTTCGGGAACTCGGACTTGAACCCAATCCCTGACGATACGCTAATCTGGAACGGGAAGCCTAAGGATAGGGCTGCTGCTAACGGATATATGAATTTGGAGTCTTTGATTTCTCAGGACTCCTATCAGAAGCAAGACCATTCACCAACATATGGCCAGGGAACCAAGAGCCTCAGTTCCACAAGAAATCCTTCACAAAATCAGGAACATGTAATAGCCGAGAGAAAGCGTCGGGAAAAGCTCAACCTGCAGTTCATAGCTCTTTCAGCCATCATTCCAGGCCTAAAGAAGACAGACAAGGCGTCAGTCCTTGGAGATGCTGTCAAATACGTGAAACAGCTTCAAGAACGTGTGAAGATGCTCGAAGAACAGACGACAAAGAAAATGGTCGAATCAGTGGTCACTGTAAAGAAATATCAGCTCTCAGATGACGAAACATCTTTATCTTATCACGACTCTGATAGCTCCTCCAACCAACCACTCCTTGAAATTGAAGCAAGAGTTTCAAACAAGGATGTACTCATTAGAATCCACTGCCAGAAAGAAAAGGGATTTGCTGTAAAAATACTTGGAGAAGTAGAGAAGCTTCACCTAACTGTCATCAATAGCAGTTTCACGGCATTTGGGGATTATATTATGGATATTACTATTGTTGCTCAGATGGACAATGGTTTCTGTACGACTGCAAAGGATCTAGTTAAAAATCTCCGACTGGCCTTTCTGCAGTTCATGTGA 1017 0.4415 MEDPTFIHQYSPMQSLGDSLDEFDFKSFSSENFSSYPSTSPKSSNPHLFDSIIENFQTGGVERPRKQLKTASGKFCPTGSKTLEASSSSSSYLISFGNSDLNPIPDDTLIWNGKPKDRAAANGYMNLESLISQDSYQKQDHSPTYGQGTKSLSSTRNPSQNQEHVIAERKRREKLNLQFIALSAIIPGLKKTDKASVLGDAVKYVKQLQERVKMLEEQTTKKMVESVVTVKKYQLSDDETSLSYHDSDSSSNQPLLEIEARVSNKDVLIRIHCQKEKGFAVKILGEVEKLHLTVINSSFTAFGDYIMDITIVAQMDNGFCTTAKDLVKNLRLAFLQFM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1085 338 Gene3D - 158 232 IPR036638 GO:0046983
Vvi7g1085 338 MobiDBLite consensus disorder prediction 135 162 - -
Vvi7g1085 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Vvi7g1085 338 Coils Coil 198 225 - -
Vvi7g1085 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Vvi7g1085 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 223 IPR036638 GO:0046983
Vvi7g1085 338 SMART finulus 165 214 IPR011598 GO:0046983
Vvi7g1085 338 PANTHER BHLH TRANSCRIPTION FACTOR 14 337 - -
Vvi7g1085 338 MobiDBLite consensus disorder prediction 135 166 - -
Vvi7g1085 338 CDD bHLH_AtNAI1_like 162 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1085 Vvi-Chr7 15299383 15301022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1085 147 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.795 7.73e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1085 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1085 - - vvi:100259543 625.935