Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1084 ATGATGTTTAAGCGGTGGATGAATCTGACAACGGGAATGGAGGATCCCACCTTCATACATCAATACCATATGCTGCCTTTTGATAACTCATTTGATGGGTTCAATTTTGACTCTTTTTCTTCTGAGAGCAACTCATCTTACCCATCTTTCAGTCCCGAAACCACACCCAACTTTTGCGGTTCAACTTTTCAGACGGGTGTAGGGAGGCAAACTAAGCAGTTCAAGACCAATAGTTGGGAATCCTGCACCACCAAACCCATAACCCCCAGAGCACCTTCGTCTTCCACCGTCCAACTAATTTCTTTTGGGAACTCGAATTTACCACCACCAACTGATACCCAGAAGTTCCATGGATACCCAGACAACAAGGTGAAGCCTAAGGATGAGGATGGGTCTGACAGAAATATGAAATTTGCATCTTTGATTTCTGAGGGCTCATATGAGAACCAAAACTATTCACCAAAATCTGGCGACAGAACCAAGAGGGTTAGTTCAACTTGTAGGACTAACAATCACGATCATGTAATAGCAGAGAGAAAGCGCCGAGGAAAGCTCACCCAGCGGTTCATAGCTCTTTCAGCCCTTGTTCCAGGCCTAAGAAAGATGGACAAGATTTCTGTCCTTGGAGATGCTGCCAAGTATTTGAAACAGCTTCAAGAACGTGTTCAGAAGCTCGAGGAACAGACGGCAACAAAAACCATGGAATCAGTGGTCTTTGTGAAGAAATCTCAGCTCTGCGATGATGAACTCTCTTCATCTGATCAGAACTCTGATAGCTGCTCCAACCAAACACTCTTAGAAATTGAAGCAAGGGTCTCAAACAAGGATGTACTCATTAGAATCCACTGCGAGAGACAAAAGGGATTTACTGCAAAAATACTTGATGAAATCGAGAAGCTCCATCTAACAGTTGTCCATTGCAGTAGCCTGCCATTTGGGGATTATATTATGGTTACTACTGTTGTTGCTCGGATGGAAGACAAATTTTGCATGACCGTGAAGGACCTCGTCAGAAACCTCCGATTGGCTTTTTCTACGCTTCATGTGAACTGA 1053 0.4387 MMFKRWMNLTTGMEDPTFIHQYHMLPFDNSFDGFNFDSFSSESNSSYPSFSPETTPNFCGSTFQTGVGRQTKQFKTNSWESCTTKPITPRAPSSSTVQLISFGNSNLPPPTDTQKFHGYPDNKVKPKDEDGSDRNMKFASLISEGSYENQNYSPKSGDRTKRVSSTCRTNNHDHVIAERKRRGKLTQRFIALSALVPGLRKMDKISVLGDAAKYLKQLQERVQKLEEQTATKTMESVVFVKKSQLCDDELSSSDQNSDSCSNQTLLEIEARVSNKDVLIRIHCERQKGFTAKILDEIEKLHLTVVHCSSLPFGDYIMVTTVVARMEDKFCMTVKDLVRNLRLAFSTLHVN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1084 350 PANTHER BHLH TRANSCRIPTION FACTOR 26 345 - -
Vvi7g1084 350 Gene3D - 160 233 IPR036638 GO:0046983
Vvi7g1084 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 235 IPR036638 GO:0046983
Vvi7g1084 350 MobiDBLite consensus disorder prediction 83 166 - -
Vvi7g1084 350 CDD bHLH_AtNAI1_like 170 243 - -
Vvi7g1084 350 MobiDBLite consensus disorder prediction 83 112 - -
Vvi7g1084 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Vvi7g1084 350 MobiDBLite consensus disorder prediction 118 135 - -
Vvi7g1084 350 Coils Coil 208 235 - -
Vvi7g1084 350 MobiDBLite consensus disorder prediction 142 160 - -
Vvi7g1084 350 SMART finulus 175 224 IPR011598 GO:0046983
Vvi7g1084 350 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1084 Vvi-Chr7 15283280 15290109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1084 104 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.726 9.87e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1084 HLH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1084 - - vvi:100254129 642.499