Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1082 ATGGATATCTCATCTGACAGATGGTTTTCGGATCTGGGAATGGATGATTACAACTTCATCGATCCATGTCATGTGAACTCTCTTGATGAGTTCACCACGCAACACATAACAACTGCACTTAGAGAGGACCTCCGGGCCCCGTCTTTGTCTTCTGATCACGAGAGCTATTCCTCTTATCCCACTTTAAATCCTGAAACCACCAGCACTACCTTTAGTGCTTCATCCATCGAACCTCATTACACCAGCTTTGGGAGGCCTGCAAAACAGCTCAAGACTAACAGTTGGAGCTCTGATACCAAACAGCATGTTATTCCAAAACCTCCTCCGTCTTCTTCTTCTTCCCTCCTTTCTTTCATGAATAATGGTTCACCGCCTGCTGTTAACACTCATCAGTATTATGGAGACTGCACCATGAAGCCGAAGGATGAGGTAATATCTCATGGAAATGTGAACTTCCCTTCTCAAATTTCTAAGGGTTCCTATGAGAACCAAAACTATGTCCCAAAGGCCAACCAGGGAACTAAGAGGGTTACCCCAATGAGAAGAACTTCTTCACATGCTCAAGATCACATAATGGCAGAGAGAAAGCGGAGGGAAAAACTCAGCCAGCGCTTCATAGCTCTTTCAGCCCTTGTTCCTGGTCTGAAGAAGATGGACAAAGCTTCAGTTCTTGGAGATGCTATCAAGTACCTGAAGCAACTTCAAGAGCGTGTGAAATCACTGGAGGAACAAATGAAGGAAACCACTGTGGAATCAGTGGTTTTTATAAAGAAGTCTCAGCTCTCTGCTGACGATGAGACCTCTTCATGTGATGAGAACTTCGATGGCTGCAGAGAGGACGCAGTCAGAGATATTGAGGCACGAGTTTCGGATAAGAATGTCCTCATCAGGATTCACTGCAAGAAACAGAAAGGATTTGTAGCCAAAGTTCTAGGTGAAATAGAGGAGCATCATCTATCTGTCGTCAACAGCAGTGTGTTGCCATTTGGGAAACATGCCATGGATATAACTGTTGTTGCTCAGATGGGCGATGAGTTGCAGGTGACAGTGAAGGATCTCGTGAATAACCTACGACTGGCTTTTCTAAAGTTCATGTAA 1098 0.4463 MDISSDRWFSDLGMDDYNFIDPCHVNSLDEFTTQHITTALREDLRAPSLSSDHESYSSYPTLNPETTSTTFSASSIEPHYTSFGRPAKQLKTNSWSSDTKQHVIPKPPPSSSSSLLSFMNNGSPPAVNTHQYYGDCTMKPKDEVISHGNVNFPSQISKGSYENQNYVPKANQGTKRVTPMRRTSSHAQDHIMAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQERVKSLEEQMKETTVESVVFIKKSQLSADDETSSCDENFDGCREDAVRDIEARVSDKNVLIRIHCKKQKGFVAKVLGEIEEHHLSVVNSSVLPFGKHAMDITVVAQMGDELQVTVKDLVNNLRLAFLKFM* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1082 365 SMART finulus 191 240 IPR011598 GO:0046983
Vvi7g1082 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Vvi7g1082 365 PANTHER BHLH TRANSCRIPTION FACTOR 50 364 - -
Vvi7g1082 365 FunFam Basic helix-loop-helix family protein 182 251 - -
Vvi7g1082 365 MobiDBLite consensus disorder prediction 46 73 - -
Vvi7g1082 365 MobiDBLite consensus disorder prediction 91 115 - -
Vvi7g1082 365 CDD bHLH_AtNAI1_like 185 259 - -
Vvi7g1082 365 CDD ACT 296 353 - -
Vvi7g1082 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 251 IPR036638 GO:0046983
Vvi7g1082 365 MobiDBLite consensus disorder prediction 50 73 - -
Vvi7g1082 365 Coils Coil 224 251 - -
Vvi7g1082 365 Gene3D - 178 250 IPR036638 GO:0046983
Vvi7g1082 365 Pfam Helix-loop-helix DNA-binding domain 189 235 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1082 Vvi-Chr7 15259088 15260585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1082 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.106 1.31e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1082 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1082 - - vvi:100251406 711.835