Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1067 ATGATTTTCCTTGGCCTTATAACCTTCTTTGACCCACCCAAGGACTCAGCAAAGCAAGCTCTATGGCGACTGGCCGAGAAGGGAGTAAAAGCGAAAGTGTTAACAGGTGACTCACTGTCCCTAGCAGTAAAGGTTTGTCAGGAAGTTGGTATCAGAACCACCCATGTGATTACTGGACCCGATCTTGAGCTTCTTGATCAGGATTTGTTCCATGAGACCGTTCAAGGGGCAACAGTACTGGCTCGTCTCACCCCCACTCAGAAACTCAGGGTAGTACAGTCCTTGCAGATGGTTGGAAACCATGTTGTTGGGTTCCTGGGTGATGGAATAAATGACTCACTTGCATTGGACGCTGCCAATGTTGGTATATCAGTTGATTCTGGAGTCTCAGTTGCAAAAGACTTTGCTGATATTATATTACTTGAAAAGGACCTGAATGTACTTGTTGCTGGAGTTGAGCGGGGTCGGCTCACCTTTGCAAACACTATGAAGTACATAAAAATGTCAGTTATTGCCAATGTGGGAAGTGTTCTTTCGATCCTTATTGCAACCCTGTTCCTTCGATATGAGCCATTGACTCCTAGGCAGCTCATCACTCAGAACTTCTTGTATAATTTTGGCCAGATCGTTATTCCTTGGGACAAGGTGGAAGAAGATTATGTGAAGACCCCACAGAGCTTTTCCAGGAAAGGCTTACCCATGTTCATTTTGTGGAATGCACCAGTGTGCACCCTCTGTGACTTAGTCACGCTTCTGTTTGTTTACTTCTATTATAGAGCCTACACTGCAAATGATGCTAGATTCTTCCATTCAGCTTGGTTCACTGAAGGGCTTCTCATGCAAACCCTAATTATACATTTGATTCGGACTGAGAAAATTCCCTTCATTCAAGAGGTTGCCTCCTGGCCTGTGATCTGTTCTACTGTCATTGTTTCTGCCATTGGAATCGCAATTCCCTTCACGCCAATTGGGAAAGTCATGGACTTTGTCCGGCTGCCATTTTCATATTATGGGTTTTTGGTTGTACTTTTCATTGGGTATTTTTCTGTTGGCCAGGTGGTTAAGAGAATCTACATTTTGATCTACCACAAATGGCTGTAA 1101 0.4405 MIFLGLITFFDPPKDSAKQALWRLAEKGVKAKVLTGDSLSLAVKVCQEVGIRTTHVITGPDLELLDQDLFHETVQGATVLARLTPTQKLRVVQSLQMVGNHVVGFLGDGINDSLALDAANVGISVDSGVSVAKDFADIILLEKDLNVLVAGVERGRLTFANTMKYIKMSVIANVGSVLSILIATLFLRYEPLTPRQLITQNFLYNFGQIVIPWDKVEEDYVKTPQSFSRKGLPMFILWNAPVCTLCDLVTLLFVYFYYRAYTANDARFFHSAWFTEGLLMQTLIIHLIRTEKIPFIQEVASWPVICSTVIVSAIGIAIPFTPIGKVMDFVRLPFSYYGFLVVLFIGYFSVGQVVKRIYILIYHKWL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1067 366 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 362 IPR023298 -
Vvi7g1067 366 SUPERFAMILY HAD-like 2 153 IPR036412 -
Vvi7g1067 366 Pfam Cation transporting ATPase, C-terminus 190 357 IPR006068 -
Vvi7g1067 366 Gene3D - 144 318 - -
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 234 250 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 269 290 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 214 227 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 182 193 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 319 340 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PRINTS Magnesium-transporting ATPase signature 164 179 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vvi7g1067 366 PANTHER CATION TRANSPORTING ATPASE 1 357 - -
Vvi7g1067 366 Pfam haloacid dehalogenase-like hydrolase 4 120 - -
Vvi7g1067 366 NCBIfam HAD-IC family P-type ATPase 77 186 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi7g1067 366 Gene3D - 11 143 IPR023214 -
Vvi7g1067 366 Gene3D - 1 10 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1067 Vvi-Chr7 15058884 15059984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1067 1 222 Primary Pumps ATPases(2) AT1G10130 30.131 1.33e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1067 K01531 - vri:117918319 724.161