Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1065 ATGGCATTAGAAGCTGTGGTGTTCCAGCAAGATCCGTTCAGTTTTGGCTGCAGGGATGTCTACGCCATGGGAGGTGGCTGGAGCTATGGCTTTGGTTTCGAAGAGGACAAGGTTTACACTCAAACTCAAACTCAGACTCTTGACGCTAATGTCGATCATCAGCAAGCTCTCCACGGTAATTGGGAGTCTTCCTGCTCTTCCATGGTGCAACATCTCAAGGAATGGGACGCCAACTCTTCCTCCACAGAAGCTTGCACTGGTGATGGGTTACTCGCCGGAGTAACACCTCAGCCGCAGGAGCCTGCAGCTACGTCAGGTCGGCGAAAGAGACGACGCACCAGAAGCGTCAAGAACAAAGAACAAGTGGAGAACCAGAGAATGACCCATATTGCAGTTGAACGCAATCGGCGCAGACAGATGAATGAACATCTAGCCGTCCTCCGATCGTTGATGCCTGCATCTTATGTTCAAAGGGGTGACCAAGCTTCAATTATAGGGGGCGCCATAAATTTTGTGAAGGAGCTTGAACAGCTCCTCCAGCCTCTGGAAGCCCAAAAACTAATGAAGCAACGATCCCAAACAGACTCCTCCACTGTCTTCTCCAACTTCTTCACCTTCCCCCAGTACTCCACGTATTCAACTCACTACAACTCCTCTGCGGCAACAAAGGAGTCCATGGCCGAGAAGCGATCCGCCATTGCAGACGTGGAAGTAACAATGGTGGAAACCCACGCAAACATCAGAGTACTATCAAGAACAAGACCAAAACAGCTCTTCAAGATGGTGGCTTGGCTCCACTCCGTCCGCCTTACCATCCTCCACCTCAACGTCACAACAGTGGATCATATGGTCCTCTACTCTTTCAGTGCCAAGGTTGAAGATGATTGCGTGCTGAGTTCCGTGAATGAGATTGCAACTGCAGTGTATGAGACGGTGGGGAGGATCCAAGGAGAGGCTCCGCTTACCTGA 969 0.5077 MALEAVVFQQDPFSFGCRDVYAMGGGWSYGFGFEEDKVYTQTQTQTLDANVDHQQALHGNWESSCSSMVQHLKEWDANSSSTEACTGDGLLAGVTPQPQEPAATSGRRKRRRTRSVKNKEQVENQRMTHIAVERNRRRQMNEHLAVLRSLMPASYVQRGDQASIIGGAINFVKELEQLLQPLEAQKLMKQRSQTDSSTVFSNFFTFPQYSTYSTHYNSSAATKESMAEKRSAIADVEVTMVETHANIRVLSRTRPKQLFKMVAWLHSVRLTILHLNVTTVDHMVLYSFSAKVEDDCVLSSVNEIATAVYETVGRIQGEAPLT* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1065 322 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Vvi7g1065 322 CDD bHLH_AtFAMA_like 127 201 - -
Vvi7g1065 322 PANTHER MAX DIMERIZATION, MAD 53 318 - -
Vvi7g1065 322 MobiDBLite consensus disorder prediction 86 122 - -
Vvi7g1065 322 Gene3D - 114 200 IPR036638 GO:0046983
Vvi7g1065 322 SMART finulus 130 181 IPR011598 GO:0046983
Vvi7g1065 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Vvi7g1065 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1065 Vvi-Chr7 15041250 15042452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1065 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.097 1.39e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g1065 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1065 - - vvi:100260285 627.091