Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1064 ATGCTCGAGTCTTCCACTGAGAAGGAAATTTCGCTGTCATCCCATAAGGACGTTGTGGAAAATCAAAATCCGCTGTCTGGATCGCGTAACATGTGGTGGAAGATTGATCGAGAAGGAAGAGCTTTCTCTTCTCTATTCCTTCGTATGCCAGGCTGTCATCGATGTGCAACGTTCTGTTTTAGGCTGCTTCCTCCTCCATCTCCTCCCCCTCCTCCCCCTCTTCGACCTCATGAAATTTCACCGATTTTGATCTTCATAGTGTGTACTCTTGGTGCTGTTTTTTTCGTTGTTAGCTGTTGCACTGTCGTATTGAAGTACTATTCGGGGTGGAACAGATCGAGGAGGAGTGATCCACCGGTTCAGAACCATACCCATGAGGATTTTATCGATGAGGAGCAAAGCCCGGTGGTATACCATCCCATATGGCTGATCAATACCGTGGGTCTCCAACAATCGGTTATTGATTTGATCACTGTGATTAAGTACAACAAAGAGGAGGGTTTGATCGAAGGAACGGAATGTTCCGTTTGCTTGGGTGAGTTTGAAGAAGATGAGAGTCTTCGGCTTCTGCCCAAGTGTAGCCATGCTTTTCACGTCCCTTGTATTGATACCTGGTTGAGGTCGCACAAAAATTGTCCACTGTGCCGCGCCCCTATAATCCACGAAAATGTCGGTTCCCATTTGAATGCCGTGGAGCAGGATTCCAATGATTCTGGGTCGAGGGAAGATATGGAGATTGACAATTCGGAGACTCACAGTGGGTTGGGGAGTTCTGAGGTTGGAGAAGGTGGGACTGCTGAAGTTGGGGTTGGTGTATTGGCAGTTGAAGAAGCAAGGACTAATGAGATTGTAAGGAAGGGTTTGCCATATATGAATGCTGGGAAATATGAGCTTCGGGTACTAAGTGATTTGGTTGACAATCATCGTGCCAGTGAAGAACAGATAGAACCTGTGAGGAGGTCAGTCTCCATGGATTTATCCGCTGCTTCGGAGATCTATCTTGCTATGGCTAATGCTGTTCCAGTGGAGCATGAAGGGACTTCAGATATGCGATCAGTACCGGGGAAAAAACTGAATTTGGAGATCGTTGCAAGGCAGAGTTGTAGAAATTCAAGCTTATACAAACTGATGAAAAGTTCTTCAATTGGGTGTTCTCTGCACAGGGGTCCACTTTCCATGAAGAAGTCTCTTTCATCTTTTCCCATGTTTTCATCCAGACGCAGCAGGAGCCGGGACTCAATCCTTCCCTTGTGA 1254 0.4657 MLESSTEKEISLSSHKDVVENQNPLSGSRNMWWKIDREGRAFSSLFLRMPGCHRCATFCFRLLPPPSPPPPPPLRPHEISPILIFIVCTLGAVFFVVSCCTVVLKYYSGWNRSRRSDPPVQNHTHEDFIDEEQSPVVYHPIWLINTVGLQQSVIDLITVIKYNKEEGLIEGTECSVCLGEFEEDESLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPIIHENVGSHLNAVEQDSNDSGSREDMEIDNSETHSGLGSSEVGEGGTAEVGVGVLAVEEARTNEIVRKGLPYMNAGKYELRVLSDLVDNHRASEEQIEPVRRSVSMDLSAASEIYLAMANAVPVEHEGTSDMRSVPGKKLNLEIVARQSCRNSSLYKLMKSSSIGCSLHRGPLSMKKSLSSFPMFSSRRSRSRDSILPL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1064 417 SUPERFAMILY RING/U-box 164 221 - -
Vvi7g1064 417 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Vvi7g1064 417 SMART ring_2 174 215 IPR001841 -
Vvi7g1064 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 224 IPR013083 -
Vvi7g1064 417 FunFam RING-H2 finger protein ATL54 149 222 - -
Vvi7g1064 417 CDD RING-H2_EL5-like 173 216 - -
Vvi7g1064 417 PANTHER RING-H2 FINGER PROTEIN ATL16 69 416 IPR044600 GO:0016567|GO:0016740
Vvi7g1064 417 Pfam Ring finger domain 173 216 IPR001841 -
Vvi7g1064 417 MobiDBLite consensus disorder prediction 230 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1064 Vvi-Chr7 15035629 15036966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1064 138 243 C3H Transcription Factor Family AT5G10380 58.929 1.05e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1064 - K10664 vvi:100854068 641.728