Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1060 ATGAAGAGACTCGGAAGCTCGGAGTCCTTGGGTGCTTTGATGGCCATCTGCCCAACTACAGATGAACACAGTCCCAGGAACAACCATGTCTACAGTAGGGAATTTCAGACCATGTTCGATGGCCTAGACGAAGAGGGCTGTGTGGAGGAATCCGGGCAGATCGTCGAGAAGAAACGGCGGTTAAGCGTCGACCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAAAATAAGCTTGAACCCGAGAGAAAGGTGAAGCTAGCCCAGGAGCTTGGGTTGCAGCCAAGGCAAGTAGCCGTTTGGTTCCAAAACCGCCGGGCCCGGTGGAAGACCAAGCAATTGGAGAGAGACTATGGCATCCTCAAGGCCAATTATGAAACTCTCAAGCTCAATTACGACGCCATCCAACACGACAATGAAGCTCTACTCAAAGAGATAAGAGAGCTGAAATCAAAGCTGAACGAAGAGAAGACAGAGAGCAATCTTTCAGTTAAAGAAGAGTTGGTGGTTTCAGAATCCGATGAGAAGGTGAAGGTGATGGAACAAAGCGAAACAGCCATGGGTGCAGGCGTCGGTGGATCTGATGCCAAAGACTTGAGCAACGACGATAGTTTCAAGGATGGCAACGGAGGAGGCAGAGTTTCAGTGTTCCCGGACATGAAAGATGGCTCCTCCGATAGCGACTCCAGCGCCATCTTGAACGAAGACAACAGCCCCAATGCCGCCATATCTTCATCTGGGGTTCTTCAGAACAACCACCACCACCACCTTCTCATGTCGCCGCCTTCCTCTTCCCTCAGGTTCAACAGCTCTTCCTCCTCCTCGATCAACTGCTTCCACTTCTCTGACTCCTCCAGACCCACTCTCGGGAATACCCAGAAAGCCTATCAACCCCAGTTCGTGAAAATGGAGGAACACAATTTCTTCGGCGCAGACGAGTCCTGCAATTTCTTCTCGGACGATCAACCTCCCACCCTTCCTTGGTACTGCCCCGATCAGTGGACCTAA 1008 0.5129 MKRLGSSESLGALMAICPTTDEHSPRNNHVYSREFQTMFDGLDEEGCVEESGQIVEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANYETLKLNYDAIQHDNEALLKEIRELKSKLNEEKTESNLSVKEELVVSESDEKVKVMEQSETAMGAGVGGSDAKDLSNDDSFKDGNGGGRVSVFPDMKDGSSDSDSSAILNEDNSPNAAISSSGVLQNNHHHHLLMSPPSSSLRFNSSSSSSINCFHFSDSSRPTLGNTQKAYQPQFVKMEEHNFFGADESCNFFSDDQPPTLPWYCPDQWT* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1060 335 MobiDBLite consensus disorder prediction 184 246 - -
Vvi7g1060 335 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Vvi7g1060 335 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vvi7g1060 335 SUPERFAMILY Homeodomain-like 44 114 IPR009057 -
Vvi7g1060 335 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vvi7g1060 335 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vvi7g1060 335 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Vvi7g1060 335 MobiDBLite consensus disorder prediction 222 246 - -
Vvi7g1060 335 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vvi7g1060 335 Gene3D - 55 119 - -
Vvi7g1060 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 296 IPR045224 GO:0003700
Vvi7g1060 335 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vvi7g1060 335 SMART HOX_1 55 116 IPR001356 GO:0003677
Vvi7g1060 335 Coils Coil 125 159 - -
Vvi7g1060 335 CDD homeodomain 57 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1060 Vvi-Chr7 14952660 14954242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1060 1 334 Homeobox Transcription Factor Family AT2G22430 42.105 6.57e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi7g1060 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1060 K09338 - vvi:100853966 619.387