Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1043 ATGAAATTTTGTTATCACCTGTGGGTGACTGTCTCTGACGACGAAAGTGGACGCCGGGCAATCCTTCAGGGGCTAGCCGGGTATGCTCAGCCGGGTGAGGTATTGGCCATCATGGGTCCTTCTGGTTGTGGCAAGTCAACTCTTCTTGATGCGTTGGCAGGGAGATTAGCTTCAAACACAAGGCAGTCTGGGGAGATTCTTGTCAATGGTAGCAAACAGAGACTTGCTTTTGGAACTTCGGCCTATGTGACTCAAGATGATACTCTGATGACCACATTAACCGTAAGGGAAGCTGTGTACTACTCTGCGCAGCTCCAACTGCCAGACTCCATGTCCAGATCTGAAAAGAAGGAAAGAGCTGAAATGACAATAAGAGAAATGGGGTTGCAAGATGCCATGAACACTAGAATAGGAGGGTGGAGCGTAAAAGGCCTTAGTGGTGGACAAAAGAGGAGGGTTAGCATTTGCATTGAAATCCTGACACGCCCCAGGCTCCTCTTTCTGGATGAGCCTACCAGTGGGCTAGACAGTGCAGCTTCTTACCATGTTATGAGCCGCATCGTTAAGCTTGCTCGTCATGATGGAATAACTGTTGTTGCATCAATCCATCAACCTAGCAGTGAAGTTTTTGAGGTCTTTCACAATCTGTGTCTTCTCTCTTCTGGTAAAACGGTATACTTCGGTTCTGCTTCAATGGCAAAAGAGTTTTTTGATTCGAATGGCTTCCCATGCCCGGCTCTGAGAAACCCATCTGATCACTACCTTAGAACCATAAACAAGGACTTCGACTCGGATACTGAACAAGGGCATGGTGGCACCACCAACACGGAAGAAGCCATTAACACTCTCATAAAGTCCTACAAGTCATCTGAGATTTGCCAACAAGTTCAGTGCCGGGTATATGAGATCTGCCAACTGAAAGGAGGACTACTTGAGAAAAAGGGAAGCCAGGCTAGCTTCATTACCCAGTGCCTTGTTCTTACTAGGAGATCCTCTGTGAACATGTACCGTGATCTAGGCTATTACTGGCTCCGTCTTGCAATCTATATTGCGTTGTGTTTATGTGTGGGAACTATCTTCTATGATATTGGCTTCAGCTATGGCTCAATTCAGGCTAGAGGATCCATGCTCATGTTTGTTGCAGCATTCTTGACTTTCATGGCAATTGGGGGGTTCCCTTCTTTTGTGGAGGACATGAAGATATTTGGGCGAGAAAGATTAAATGGTCACTACGGTGTTGGCGCATTTGTGGTGGGGAACACGTTTTCTTCCATTCCTTACTTGCTTATGATCTCTTTGATTCCTGGAGTAATTGCGTATTACCTTGTTGGACTTCACAAGGGGTTTGAACACTTCGTCTACTTTGCTTTGATGCTATTTGTATGTATGATGTTGGTTGAGAGCCTAATGATGATTGTGGCGAGCATCGTGCCAGACTTCCTCATGGGAATCATAACAGGCGCAGGAATTCAGGGTGTGATGATGTTGAACGGGGGCTTCTTCCGATTGCCAAATGATCTTCCTAAGCCTTTTTGGAGATACCCAATGTACTACATTGCCTTCCATAAGTATGCAAACCAAGGCTTCTACAAGAACGAGTTTCAAGGATTAACATTCCCTAACAATCAAGCAGGAGGACCACCCACCATTAGTGGTGAAGAAATCTTGCAGAACGTTTGGCAAGTGGAGACGGGTTACTCTAAGTGGGTTGATGTTGCTATCTTATTTGGGATGGTGGTTCTCTATCGACTCCTATTTCTGGGAATTATAAAGACTGTTGAAAAGGTTAAGCTCATGATCAAAGATCTGATGGTTGCCTCTCCTGAGAAATCCAAGCAAATCATAGAAAATCCCCCGTCATCCCCCTATTTACATGCAGCAAAAATGTAG 1890 0.4534 MKFCYHLWVTVSDDESGRRAILQGLAGYAQPGEVLAIMGPSGCGKSTLLDALAGRLASNTRQSGEILVNGSKQRLAFGTSAYVTQDDTLMTTLTVREAVYYSAQLQLPDSMSRSEKKERAEMTIREMGLQDAMNTRIGGWSVKGLSGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYHVMSRIVKLARHDGITVVASIHQPSSEVFEVFHNLCLLSSGKTVYFGSASMAKEFFDSNGFPCPALRNPSDHYLRTINKDFDSDTEQGHGGTTNTEEAINTLIKSYKSSEICQQVQCRVYEICQLKGGLLEKKGSQASFITQCLVLTRRSSVNMYRDLGYYWLRLAIYIALCLCVGTIFYDIGFSYGSIQARGSMLMFVAAFLTFMAIGGFPSFVEDMKIFGRERLNGHYGVGAFVVGNTFSSIPYLLMISLIPGVIAYYLVGLHKGFEHFVYFALMLFVCMMLVESLMMIVASIVPDFLMGIITGAGIQGVMMLNGGFFRLPNDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNQAGGPPTISGEEILQNVWQVETGYSKWVDVAILFGMVVLYRLLFLGIIKTVEKVKLMIKDLMVASPEKSKQIIENPPSSPYLHAAKM* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1043 629 Pfam ABC-2 type transporter 322 534 IPR013525 GO:0016020|GO:0140359
Vvi7g1043 629 CDD ABCG_EPDR 12 228 - -
Vvi7g1043 629 Gene3D - 6 321 IPR027417 -
Vvi7g1043 629 Pfam ABC-2 type transporter 203 258 IPR043926 GO:0140359
Vvi7g1043 629 Pfam ABC transporter 28 173 IPR003439 GO:0005524
Vvi7g1043 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 246 IPR003439 GO:0005524
Vvi7g1043 629 ProSitePatterns ABC transporters family signature. 145 159 IPR017871 GO:0005524|GO:0016887
Vvi7g1043 629 SMART AAA_5 31 218 IPR003593 GO:0016887
Vvi7g1043 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 236 IPR027417 -
Vvi7g1043 629 FunFam ABC transporter G family member 11 3 286 - -
Vvi7g1043 629 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 6 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1043 Vvi-Chr7 14762359 14765617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1043 21 231 Calmodulin-binding Proteins AT2G36910 27.778 1.04e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1043 K05681 - vvi:100261064 1262.28