Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1039 ATGGCTTTGGAGCTTGTTGGAGGGGCTGCGTTGGGAGCAGTGTTTAAGAAGTTGTTCGTGGCGGTTGAAGATGCAAGGACTAAGGCAACCAAGTTCGACTCCAGCCTCAAAAAACTCGAAGAGACACTCAAATCCATAAATCCAAGTATCCTAGAGATGAAAAGGATGAACGACCAGTTGGATCATCCAAAGGAGGAAATGGAGAAGTTGATCCAAATCTTAAAAGATGGGGAGAAGCTAATCCACAAGTGCTCCAAGGTCTCTTGTTGCAACTACTTCAAGAAGGGGAGGAACAACATGCAGATTCTGATCCTGCTCAAATCAAATAGATTCAGTTGGAGTAACAGAGGGGTTTCCGTTAAATATGAAAGTTTGGGTTCCTGTGAGGCTACTGATCCGCCGGCTTTTATGGTGGGACTAGATGTGCCTCTCAAAGAATTGAAGAGGTGGCTGTTTACGGATGGGGAATCAAGGATTGTGGTGTCGGCTCCTGGAGGATGTGGGAAAACCACTTTGGCTAAAAGGCTTTGTCACGACCAACAAGTCAAGGAATATTTTCAGCACATTTTCTATGTCACGGTGTCAAAAACATTCAACCTAATTGGCATCATCAAGAAACTATTTTGGCATAGTGATGAACAAGTGCCGGGGTTTCAAAATGAGGAAGATGCAGTCAACCAATTGGAACTAATGCTGAAGAGGAAAGTAGAATCTGGTCGTATACTGTTGGTCCTAGATGACGTTTGGTCTGGGTCGGAATCTTTCCTAACCAAGTTTAACTTCCAAATATCGGGATGCAAGGTTCTGATTACATCTAGAAATGAATTTCCAAAATTTGGTTCTACATATTACTTGAAATTGTTGAGTGAAGAAGATGCCAAGACTCTTTTCCGTCACTCAGCAATCCCTGAGGATGGGAGTGGTTCTTCCATGCCCGGTGAAGACCTTGTGAATACGATAGTGAGGCGCTGCAAGGGATTTCCACTGGCCCTGGAAGTGGTTGGCAGATCGCTCCATGGGCAGCCTGTAGAGATCTGGAGAAGCACACTGATGAAATTATCTGAAGGTCAATCCATTGTCAATTCTGAAGATGAACTGCGTAATTGTCTTCAGAGTAGCTTAGATGCCCTTGATGACAAGGATATTATGCTGAAGGAGTGTTTTATGGACTTGGGCTCATTTCCTGAAGACCAAAAAATCCCTGCCACTGCTCTTATAGATATGTGGGCGGAATTGCACAAACTAGATAAAGACGGCATTTATGCCATTTCCAACCTTCACAAACTCTGCTCTCGGAATCTGCTTAATCTTGTGGTCACAAGGAATGATGCAAATGAGATTGATTGGTGCTACAATGATGCCTTTGTCATGCAGCATGATCTTCTCAGGGATCTAGCCATTTATCAGAGCAACCAGGAGTCCATAGAAAAGAGGAAAAGACTAATCATGGACTTGACAGGAAACAGACTCCCCGAGTGGTGGACTAAAGAAAATCAACCCCAATTAAGTGCTCGTCTTGTGTCCATCTCCACAGACGAAATGTTCTCCTCAAGCTGGTGCAACATGGAACTTCCTGAAGCTGAGGCTCTAATACTGAACTTTAATCAGACAGAAAATAAATACGAATTGCCAGAGTTCATGAAGCAAATGGATAAACTGAAGGTTCTAGTAGTAACAAATTATGGTTTCTGTGCTGCTGAATTGACTAATTTTTCAGTTCTCAGTTCCTTATCCAATCTAAAGAGAATCAGGTTAGAGCAAGTTTCAATTCCAACACTATGCAACACCAGTATGGAATTGAAGAATCTGGAAAAGCTATCCTTAGTCATGTGTCATAAGATTGGTCAAGCTTTTGCAAGTAGTACCATCCAGATTCCAGAAATGTTACCAAACCTTAGGGAAATCAACATTGATTACTGTAATGACTTGGTGGAATTACCAGAAGGGTTTTGTGACTTAGTCCAGTTGAATAAGCTGAGCATCAGCAACTGCCATAAGCTGTCTGCACTGCCGGAAGGAATAGGGAAGCTTACAAATCTGGAAGTGCTAAGGGTTAGTGCCTGTACATTGGTGTCAAAATTGCCAGACTCAATGGGAAGCCTCCACAAGTTGAGCGTTCTTGATATAACTGGTTGTTTACGAATAAGGAAAATGCCGAAACAAATAGGGGAGTTGCGTGGTCTAAGAGAGCTCCACATGAGAAGGTGCCCAGGTTTGCGCGAGCTGCCACCATCAGTGACGCTTCTCGTGGATTTGGAGAGGGTAATCTGCGATGAAGAGACTGCCCAGCTGTGGGAATGTTATACGCACTTGCTCCCCAATCTCACCCTATCAGTGCCTGAAGAAATTATCAACTTGAATTGGCTTTAA 2370 0.4333 MALELVGGAALGAVFKKLFVAVEDARTKATKFDSSLKKLEETLKSINPSILEMKRMNDQLDHPKEEMEKLIQILKDGEKLIHKCSKVSCCNYFKKGRNNMQILILLKSNRFSWSNRGVSVKYESLGSCEATDPPAFMVGLDVPLKELKRWLFTDGESRIVVSAPGGCGKTTLAKRLCHDQQVKEYFQHIFYVTVSKTFNLIGIIKKLFWHSDEQVPGFQNEEDAVNQLELMLKRKVESGRILLVLDDVWSGSESFLTKFNFQISGCKVLITSRNEFPKFGSTYYLKLLSEEDAKTLFRHSAIPEDGSGSSMPGEDLVNTIVRRCKGFPLALEVVGRSLHGQPVEIWRSTLMKLSEGQSIVNSEDELRNCLQSSLDALDDKDIMLKECFMDLGSFPEDQKIPATALIDMWAELHKLDKDGIYAISNLHKLCSRNLLNLVVTRNDANEIDWCYNDAFVMQHDLLRDLAIYQSNQESIEKRKRLIMDLTGNRLPEWWTKENQPQLSARLVSISTDEMFSSSWCNMELPEAEALILNFNQTENKYELPEFMKQMDKLKVLVVTNYGFCAAELTNFSVLSSLSNLKRIRLEQVSIPTLCNTSMELKNLEKLSLVMCHKIGQAFASSTIQIPEMLPNLREINIDYCNDLVELPEGFCDLVQLNKLSISNCHKLSALPEGIGKLTNLEVLRVSACTLVSKLPDSMGSLHKLSVLDITGCLRIRKMPKQIGELRGLRELHMRRCPGLRELPPSVTLLVDLERVICDEETAQLWECYTHLLPNLTLSVPEEIINLNWL* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1039 789 Pfam NB-ARC domain 144 373 IPR002182 GO:0043531
Vvi7g1039 789 Gene3D Ribonuclease Inhibitor 470 789 IPR032675 -
Vvi7g1039 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 391 IPR027417 -
Vvi7g1039 789 Gene3D - 288 372 IPR042197 -
Vvi7g1039 789 Gene3D - 373 469 IPR036388 -
Vvi7g1039 789 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 4 102 IPR008808 -
Vvi7g1039 789 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 789 IPR039203 GO:0050832
Vvi7g1039 789 Gene3D - 119 277 IPR027417 -
Vvi7g1039 789 SUPERFAMILY RNI-like 517 743 - -
Vvi7g1039 789 Coils Coil 22 42 - -
Vvi7g1039 789 PRINTS Disease resistance protein signature 324 338 - -
Vvi7g1039 789 PRINTS Disease resistance protein signature 158 173 - -
Vvi7g1039 789 PRINTS Disease resistance protein signature 235 249 - -
Vvi7g1039 789 PRINTS Disease resistance protein signature 699 715 - -
Vvi7g1039 789 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1039 Vvi-Chr7 14712959 14716610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1039 166 742 WRKY Transcription Factor Family AT5G45050 23.148 3.07e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1039 - - vvi:100246286 1560.43