Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1023 ATGGGTTCGAATATGGCGGAGCTAAGGTTGGATTTGAATCCAGGGTGCGAACTGAAAACTGTGTCTAGCTTTCTGAGAGAAGTTTCGATGATGAGAGACAGTTCTGAGAAATTGTCGAAGCTTGATGATTATGTTAAAGGATTGGAAGATGAGATGAGAAAGATCGATGGCTTCAAACGCGAACTTCCTCTCTGCATGCTGCTCTTAAACGATGCGATTTTGAGATTGAGGGAGGAAGCAATGCAGTGTACTGAATCGGAGGGTGGACATGTCACAGAAGAATTCATTCCATTGAAGGGTAGATCTGAAGGAGATGAGGGAGCAGAAATGGGAAAGGATTCAAGTGACAAGAGGAGCTGGATGAGCTGTGCACAGCTCTGGAGCTGTAACCGAAGCTCTGACAATAACAATAAAAAATCAGTACTAGAATTCCAACAGAGAAATGAGGAAGATAATAACTCTGGGTCTGAGAATCCGATTCGGCCTTGTAGTTATGGAAACAGGGCAGGGGCATTTGTGCCATTTAAGGTGAGCTCTGGTTTTCCGGCGAAGGGAGACAAGGAGGTTGTGCCAGTTGCTGGTCTTTCTCTCATGACTCCGATGGTCGAAGTGGATCCTAACAATTCGAATTCAAAGTGTGGGAATAGTGGGGAAACTGGTTCTGGTTCTGTTTCGACTTTGTTGACAGACTCGATGAGGCTACAGTGCAAATCGCAACAGCAGCCACCGCAACAGGGAATCAGGAAACAGAGGCGGTGCTGGTCACCGGAGCTACATCGGCGTTTCGTCAACGCTCTTCAACAACTTGGGGGATCTCAAGCCACTCCTAAACAGATTCGAGAACTCATGCAAGTGGAAGGTCTCACTAACGATGAAGTAAAAAGCCATTTACAGAAATACAGACTTCACGTCCGGAGGATCCCATCCACTTCAGCTGCTCCTGCAAATGGATCATGGGTGCCCCAAGTTCAGGTTGGAGACGTCTCAAAGAAAAACATTTCCCAGTCCGGCTCTCCACAAGGCCCACTCCATTTAGCTGGGTCTGCTAAAGGTGTATCAGGTACTGGAGGAGACAGCATGGAGTACGATGAAGATGATAAATCCGAGGGCCACAGTTGGAAAGATCAGCTTCACAAGCCAGGAGAAGATGACGTATAG 1158 0.4715 MGSNMAELRLDLNPGCELKTVSSFLREVSMMRDSSEKLSKLDDYVKGLEDEMRKIDGFKRELPLCMLLLNDAILRLREEAMQCTESEGGHVTEEFIPLKGRSEGDEGAEMGKDSSDKRSWMSCAQLWSCNRSSDNNNKKSVLEFQQRNEEDNNSGSENPIRPCSYGNRAGAFVPFKVSSGFPAKGDKEVVPVAGLSLMTPMVEVDPNNSNSKCGNSGETGSGSVSTLLTDSMRLQCKSQQQPPQQGIRKQRRCWSPELHRRFVNALQQLGGSQATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRIPSTSAAPANGSWVPQVQVGDVSKKNISQSGSPQGPLHLAGSAKGVSGTGGDSMEYDEDDKSEGHSWKDQLHKPGEDDV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1023 385 Gene3D - 247 307 - -
Vvi7g1023 385 MobiDBLite consensus disorder prediction 98 116 - -
Vvi7g1023 385 SUPERFAMILY Homeodomain-like 247 306 IPR009057 -
Vvi7g1023 385 MobiDBLite consensus disorder prediction 206 225 - -
Vvi7g1023 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 249 303 IPR006447 GO:0003677
Vvi7g1023 385 FunFam Myb family transcription factor 248 305 - -
Vvi7g1023 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 305 IPR017930 -
Vvi7g1023 385 MobiDBLite consensus disorder prediction 331 385 - -
Vvi7g1023 385 MobiDBLite consensus disorder prediction 360 385 - -
Vvi7g1023 385 Pfam Myb-like DNA-binding domain 251 301 IPR001005 -
Vvi7g1023 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 17 374 IPR044787 GO:0003700|GO:0006355
Vvi7g1023 385 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1023 Vvi-Chr7 14553902 14555805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1023 8 298 G2-like Transcription Factor Family AT4G37180 41.980 7.85e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi7g1023 Myb_DNA-binding 4.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1023 - - vvi:100243049 771.541