Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1021 ATGTCTTCGTCTAATTCTCCGTGTGCGGCGTGCAAGATTCGCCGGCAAAAGTGTACGCAAGAGTGTGTACTCGCACCCTATTTCCCACCAGATCAGCCTCAGAAATTCGTTAATGTCCACAAGGTCTTCGGTGCAAGCAATGTTACAAAGCTTCTCAACGAACTAAATGCTGCAAATCGAGAAGATGCCGTGAATTCCCTGGCTTATGAAGCCGAGGCTCGTCTTCGTGATCCCGTCTATGGCTGTGTTGGTCTGATTTCAGTTCTTCAACAAAGACTTAAGCAAGTTCAGAGTGACCTTTTGGCTGCCAAAAAGGAACTAGCTGCATATATTGGTCCATCAGCGATGTTACCTTTTATCCAACATGTCGAGTATATGCCACAGCAATACATGAGTGATCCTTCTTCATCGTCGGTGATTCCTTATAATATGTCTCCAATTTTGGGTCTTCCCCCCGGTGCTTCACACAGTGGGCAATTGGTAATTCGTGAGCCACAGCCACAGCAAACTCAGCAGTATCAGCATCAGCAACAACAGATCCTTGAGGCTCAGCAATTAGCTACAGCTATGGCAGTAAGAGGGCAAGAGATATTGAGGACTCATGAGCAGCAGCTACAGGAACAAAATCTTATTCGGTTCGACAGTGGGTTTGACGCTGATGCTATGGTCGGTGCTGCAAGTAGTTTCAACCAGATGACTGAAGCTGTAATGTCACCATCTCTGGCTTTGGGTACATTTGATGATGCTTATCAGCTTGAAGAACAGCAACAAGAGCATCAGCTTCGGCCCCAGCTGCTGCCTCAGACCCAAAAACAACCTCAACAGCAGCAACCACAGTTACCTCAACAGCAGCGAGGAGTTGGAAGCGAGGAGGGCAGAAGCGTGGGCCCCTCTTGTTAA 900 0.4778 MSSSNSPCAACKIRRQKCTQECVLAPYFPPDQPQKFVNVHKVFGASNVTKLLNELNAANREDAVNSLAYEAEARLRDPVYGCVGLISVLQQRLKQVQSDLLAAKKELAAYIGPSAMLPFIQHVEYMPQQYMSDPSSSSVIPYNMSPILGLPPGASHSGQLVIREPQPQQTQQYQHQQQQILEAQQLATAMAVRGQEILRTHEQQLQEQNLIRFDSGFDADAMVGAASSFNQMTEAVMSPSLALGTFDDAYQLEEQQQEHQLRPQLLPQTQKQPQQQQPQLPQQQRGVGSEEGRSVGPSC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1021 299 Coils Coil 86 106 - -
Vvi7g1021 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 183 - -
Vvi7g1021 299 MobiDBLite consensus disorder prediction 254 299 - -
Vvi7g1021 299 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vvi7g1021 299 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vvi7g1021 299 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1021 Vvi-Chr7 14525652 14526551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1021 1 249 AS2 family AT5G66870 51.866 2.46e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g1021 LOB 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1021 - - vvi:100246034 504.212