Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1020 ATGTCATCATCTAATTCTCCGTGTGCGGCGTGCAAGCTTCAAAGGCGGAAATGTACACAAGAGTGCATATACGCACCCTATTTCCCACCAGACCAGCCTCATAAATTCGCTAATGTCCACAAGGTCTTCGGTGCAAGCAATGTTGCAAAGCTTCTGAATGAAATAAATGTTGCACATCGAGAAGATGCCGTGAATTCCCTAGCTTATGAAGCGGAAGCTCGTCTTCATGATCCCGTCTATGGCTGCGTTGGTCTAATTTCAATTCTTCAACAAACCCTCAAGCAAGTTCAGAGTGACCTATTGGCTGCCAAAAAGGAACTATCTGCATATATTGGTCCTATAGCGATGCAACCTAATTTTCAACATCCCGGGTATATGCCACAACAGCACATGACTAGTCCTTCTTCATCGTCTCTGATTCCTTATAACATGTCACCCTTGGGTCTTCCCACGGGTGCTTCACATGGTGGGCAATTGGTGATTCGTGAGCCACAGCCTCAACAATCGCAGCAGTATCAGCATCAGAGGCAAAACATCCTTGAGGCCCAGCAAATGGCGGCTAGAGAGCAACAAGAGATGTTGAGGACTTTCGAACAGCAGCAACGGCAACAAGAGCTTATGAGGTTTAACAGTGGATTCGAAGAAGCTGGTACGGTCGGTGCAGGTGGTTTCAATCAGACAACTGCGGCTACTATGGTACCGTCCCTGGCTTTAGGTAAATTCGATAACCCTTACTAG 738 0.4688 MSSSNSPCAACKLQRRKCTQECIYAPYFPPDQPHKFANVHKVFGASNVAKLLNEINVAHREDAVNSLAYEAEARLHDPVYGCVGLISILQQTLKQVQSDLLAAKKELSAYIGPIAMQPNFQHPGYMPQQHMTSPSSSSLIPYNMSPLGLPTGASHGGQLVIREPQPQQSQQYQHQRQNILEAQQMAAREQQEMLRTFEQQQRQQELMRFNSGFEEAGTVGAGGFNQTTAATMVPSLALGKFDNPY* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1020 245 Coils Coil 86 106 - -
Vvi7g1020 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 183 - -
Vvi7g1020 245 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vvi7g1020 245 Coils Coil 172 200 - -
Vvi7g1020 245 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1020 Vvi-Chr7 14518760 14519497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1020 1 239 AS2 family AT5G66870 54.962 2.71e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g1020 LOB 1.8e-40 No_clan