Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1019 ATGTCATCATCTAATTCTCCTTGCGCGGCGTGCAAGCTTCTCAGACGGAAATGTACGCAAGAGTGTGTATTCGCACCCTATTTCCCACCAGATCAGCCTCAAAAATTCGCTAATGTCCACAAGGTCTTCGGTGCAAGCAATGTTTCAAAGCTACTCAACGAACTAAATGCCGCCCATCGAGAAGATGCCGTGAATTCCCTAGCTTATGAAGCGGAGGCTCGTCTTCGTGATCCCGTCTATGGCTGCGTCGGTCTGATTTCAATTCTTCAACAAAGACTCAAGCAAGTTCAGAATGACCTTTTCACTGCCAAAAAGGAACTATCTGCATATATTGGTCCCTCAGCGATGCTACCTATTCCTCAACCTGCCGGCTGTTTGCCACAACAACACATGAGTAATCCTTGCTCATCGTCTCAGATTCCTTATAATACGCCTCCAATGTTGGGTCTTGCCACCGGTCCAACACATGGTAGGCAATTGGTAATACGTGAGCCGCACCAAACGCAGCAGTATCAGCATCAGCAGCAGATCCTTGAGGCTCAGCAAATAGCGGAAGCTGTGGCAGCAAGAGAGCAACAAGAGATGTTGAGGACTTATGAGCAGCAGCGGCAACAACAACAACTGCTTGTTAGGTTCAACAGTGGGTTTGACGCAGGTGGTACGGTTGGTGCAAGTAGTTTCAACCAGATGACTGCTGCAATTTCACCATCCCTGGCTTTGGGTCCATTTGATAATTCTTATCAGCTTGAAGAACAGCAACAAGAGCTTCATAGGCCCCAGATGCTGCTTTCAACCCAAACACAACCTCAACAACAGCAACCACAGTTACCTCAACAGCAACAAGTAGGGGTGTGCACGGATCAGTCAGTTCGGTTCTGA 879 0.4801 MSSSNSPCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELNAAHREDAVNSLAYEAEARLRDPVYGCVGLISILQQRLKQVQNDLFTAKKELSAYIGPSAMLPIPQPAGCLPQQHMSNPCSSSQIPYNTPPMLGLATGPTHGRQLVIREPHQTQQYQHQQQILEAQQIAEAVAAREQQEMLRTYEQQRQQQQLLVRFNSGFDAGGTVGASSFNQMTAAISPSLALGPFDNSYQLEEQQQELHRPQMLLSTQTQPQQQQPQLPQQQQVGVCTDQSVRF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1019 292 Coils Coil 86 106 - -
Vvi7g1019 292 MobiDBLite consensus disorder prediction 263 292 - -
Vvi7g1019 292 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vvi7g1019 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 189 - -
Vvi7g1019 292 Coils Coil 189 209 - -
Vvi7g1019 292 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1019 Vvi-Chr7 14506356 14507234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1019 1 233 AS2 family AT5G66870 56.225 6.06e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi7g1019 LOB 3.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1019 - - vvi:100240825 499.975