Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1010 ATGGACAATGACTCCGACAGTTCAAGTGGTGGTGATGAATTGAAGACCAAAGAAGATCAACTTCATCAAGGGAATGAAAGAAAATGCAAGTTAAAGCAGCCCGTCGAAGAAACGATTGCAGGTGTGCGGTTTAGTCAAGGGACGCCATGCTTGGGCCGGTTGTCCAACAAGGTTAAAGCTAGAGCTCTAAAAGCTGCAAGCAAATTCGTCTCCAATTATCCCTTTTTCAAAATTGTTATGCAGTCAACTTATCTGCATAGTGGATATCTGAGGATACCAAAGCAATTTTCCAGCACGCATATAAAAGGAAGTTCAAGAAAAGCAATGCTTTGGGCATCGGATAGATTTTGGCCTGTGAAGCTATTGGTCTACCCACTCTGGTCTTCTGTGCTCACTACAGGTTGGGTGGACTTCGTGAAGGAAAATGCTTTGCGAGAAGGAGATGTCTGTGTCTTCGAAATGTATGGAAGTAATGACGTTGTGCTGAAAGTTACCTTTTTCAGATGCCTTGCCTAA 516 0.4322 MDNDSDSSSGGDELKTKEDQLHQGNERKCKLKQPVEETIAGVRFSQGTPCLGRLSNKVKARALKAASKFVSNYPFFKIVMQSTYLHSGYLRIPKQFSSTHIKGSSRKAMLWASDRFWPVKLLVYPLWSSVLTTGWVDFVKENALREGDVCVFEMYGSNDVVLKVTFFRCLA* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1010 171 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 51 168 IPR044837 -
Vvi7g1010 171 Gene3D - 54 170 IPR015300 -
Vvi7g1010 171 ProSiteProfiles B3 DNA-binding domain profile. 75 170 IPR003340 GO:0003677
Vvi7g1010 171 CDD B3_DNA 75 168 IPR003340 GO:0003677
Vvi7g1010 171 MobiDBLite consensus disorder prediction 8 28 - -
Vvi7g1010 171 Pfam B3 DNA binding domain 75 168 IPR003340 GO:0003677
Vvi7g1010 171 SUPERFAMILY DNA-binding pseudobarrel domain 72 169 IPR015300 -
Vvi7g1010 171 SMART B3_2 75 170 IPR003340 GO:0003677
Vvi7g1010 171 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1010 Vvi-Chr7 14403658 14404364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1010 59 169 B3 DNA Binding Superfamily AT3G18990 38.393 4.08e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi7g1010 B3 2.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1010 - - vvi:100265476 303.523