Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1009 ATGTTTCTCAAGGTTCCTAGTGGCGCAGTGTGGCAAGTGGGACTGAAGAGAGGCGATGGTGAGGTTTGGTTGGATGGTGGCTGGCGGGAATTTGTTGAGTATTACTCCATTGGGTATGGGCATTTTTTAGTATTCAGATATGAAGGAAATTCCATTTTCCATATACTTATATTTGATATGACTGCTTCCGAGATTGAATATCCTTCCACTAATGCCCCACATTATGAAGAACCAAGCAGTAACATTGGGGGAAGCCTACCGCCCAAGATGGAAGAAATTGACAATGATGTTTCTGTTGAGATTTTGGATGTTTTTCCAGCCAGGCAGACAACAAAGGAGAAAGACACGATCAATATATCTTCTAGTGAAGAAGAGTTCACCCCCTGTTTGCCCGAAATTGTGGAAATTGAGAGTGATGTTTCCGTTGGAACGTTTGATGTTTTCCCTACAAGCCAGAATCCAGAAGAGAAAGAAGTTCGCCTTTTCTTCAGCCCACTAGAAAAGAAGCACAACTCTTCTCGGAAAACTGATACACCTCCAATGTCCGATCTTCTGTTTCACATTTCAGCCCAAAGGATTGGCCATGATTTTCACGCAAAAGAGAGCTGTGGAACAGTAGCCGCCATTCAAAGAAACGTGCTGTCCGGGGTTCTACCACCAGTGACCGCCAGCAAAGAAGTAGGGGCTCTTCAAAGAGCCATAGCTTTCAACCCGGAAAATCCTTTCTTCAGAGCGAAAATGGGACCAAGTTACCTCGGACCGTCAAGGCATGGTTTGAATATACCAATCTGGTTTGTGGAGAGGTACTTCAAAACAGATGACAAGTCCATAACCCTTTGGGGTTCGGATGGGAGAACTTGGTCCACTAGCTACCGTCTGGGAAGGAGGAGAAACGGAAAGCGGGTTGCAGAACTACTCTATTCTGGTTGGAAAATATTCGTGCAGGATAATCAGTTGAAATTAGGTGATGTTTGTGTGTTTGTATTAATCAAATCCCCTGGAATTTTATTGAAGGTTGTCATTTTCGGCAACAGTGAAGATGCAGATCACTAA 1053 0.4397 MFLKVPSGAVWQVGLKRGDGEVWLDGGWREFVEYYSIGYGHFLVFRYEGNSIFHILIFDMTASEIEYPSTNAPHYEEPSSNIGGSLPPKMEEIDNDVSVEILDVFPARQTTKEKDTINISSSEEEFTPCLPEIVEIESDVSVGTFDVFPTSQNPEEKEVRLFFSPLEKKHNSSRKTDTPPMSDLLFHISAQRIGHDFHAKESCGTVAAIQRNVLSGVLPPVTASKEVGALQRAIAFNPENPFFRAKMGPSYLGPSRHGLNIPIWFVERYFKTDDKSITLWGSDGRTWSTSYRLGRRRNGKRVAELLYSGWKIFVQDNQLKLGDVCVFVLIKSPGILLKVVIFGNSEDADH* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1009 350 Gene3D - 1 62 IPR015300 -
Vvi7g1009 350 ProSiteProfiles B3 DNA-binding domain profile. 244 345 IPR003340 GO:0003677
Vvi7g1009 350 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Vvi7g1009 350 PANTHER B3 DOMAIN-CONTAINING 2 331 - -
Vvi7g1009 350 CDD B3_DNA 241 342 IPR003340 GO:0003677
Vvi7g1009 350 SUPERFAMILY DNA-binding pseudobarrel domain 237 345 IPR015300 -
Vvi7g1009 350 Pfam B3 DNA binding domain 2 59 IPR003340 GO:0003677
Vvi7g1009 350 Pfam B3 DNA binding domain 255 342 IPR003340 GO:0003677
Vvi7g1009 350 SUPERFAMILY DNA-binding pseudobarrel domain 2 68 IPR015300 -
Vvi7g1009 350 Gene3D - 221 346 IPR015300 -
Vvi7g1009 350 CDD B3_DNA 1 59 IPR003340 GO:0003677
Vvi7g1009 350 SMART B3_2 243 345 IPR003340 GO:0003677
Vvi7g1009 350 SMART B3_2 2 61 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g1009 Vvi-Chr7 14390937 14392419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g1009 3 342 B3 DNA Binding Superfamily AT3G18990 28.080 1.79e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi7g1009 B3 1.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1009 - - vvi:100267202 646.351