Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0999 ATGTTGGGTGAAGAAGGAAAGGACCCCCTCCCCGGTGGACGTGGGACTCGGAGAGCTTATTTACGCTCAGTATCATGGACTGATCGCTCTCCAACGAAACCTCTTCCTAGACCACAGCCAAACACTAAGATGAGGTCGTGTCTGCCACCACTGCAGCCCCTTTCAATTTCCCGGCGCAACGCAGAGGAGTGGCCGAGAGCGGGCTCGGATGATCTGGGTGTTTGGCCGCATCCCCCAACCCCAGGGGGGAGATTGGGGTCAGTCAAACCCCTTGAGAATTCAAATTCAGAACAACCCCAGAGAGAATTTCAGTTGAAGAAGGACAAGCTTGCCTTCTTTGATAAGGAATGCTCCAGAATTGCAGATCATATATATTTGGGAAGTGATGCTGTTGCTAAGAACCGTGAAACTCTGAGGCAGAATGGTATCACCCATGTGTTGAACTGTGTTGGGTTTGTTTGCCCTGAGTATTTCAAGAGTGACCTTGTTTACAAGACACTTTGGTTGCAAGATAGCCCATCGGAGGACATCACCAGTATTCTTTACGACGTATTTGATTACTTTGAGGATGTTCGAGAGCAAGGTGGGCGGGTTCTTGTTCACTGTTGTCAGGGAGTATCAAGATCAAACTCTCTGGTCATTGCATACCTCATGTGGAGGGAGGGCCAGAGCTTTGAAGATGCATTTCAATATGTGAAAGCAGCCCGAGGAGTGACCAACCCGAACATGGGTTTTGCCTGTCAACTTCTGCAGTGCCAGAAGCGGGTGCATGCTGTACCAGTGAGCCCGAATTCTGTGCTTAGGATGTATCGGATGGCCCCCCACTCTCCATATGATCCTCTTCATCTCGTACCAAAAATGTTAAGCCATCCAGGTACACTTGGACTTGACTCTCGAGGGGCATTCATTGTTCATGTCCCTTCAGCGATATATGTCTGGATAGGGGAGAATTGCAACTTAGTGATGTCAAATAATGCAAGAACAGCTGCCTGTCAGGTCATTCGATATGAGAGAGCACAGGGTCCAATTGTGAACATCAAAGAAGGTGAGGAGACATCTGAATTTTGGGATGCTCTTGGTAGTGGACAACTCTTGGCAGATCATAGCAACAAAGTGGGTGCCAAAGATGAAAGTAGTTCGTCTTCTGAAAATGATAAAGTCTGTCCTGGGATTGGCGAAAGGAAGGTCAATGAGTATGATCTTGATTTTGAAATTTTCCATAAGGCTCTTGCTGGTGGGGTTGTTCCACCTTTTCCATTACCAGGAACTGGATCTGAGACCTGTCTCCCTGCTAGGGAAAATGGATGGGGTAGACTAAGGCGGAAGTTTACTTGTGGTTTTGTGAAAGAATTTGTCACAAAACTGAATTGTGACACCACTCAATCCAATCATGGAGCAGATATGATTATAGATGCTAGTAAAGAAGTGAAAAACACTGTTTCCATGTCTGATCCTTTGTCACCATTAACACCTCCATGTGGTTCACCAGTTTTGCTTCCCTATTCCCCAGATGGCAGCTCAATAGGCAGTATGGCTAAAGATGTTGAACACTCTGTTCCTCTTACTGATCCTTCATCACCACAAACACCTAAATGTGGTTCACCAGATTCTTTCTCTTGTTTTCTGGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCATTTACCTTTTCACCCTCGTCTTCTAA 1764 0.4371 MLGEEGKDPLPGGRGTRRAYLRSVSWTDRSPTKPLPRPQPNTKMRSCLPPLQPLSISRRNAEEWPRAGSDDLGVWPHPPTPGGRLGSVKPLENSNSEQPQREFQLKKDKLAFFDKECSRIADHIYLGSDAVAKNRETLRQNGITHVLNCVGFVCPEYFKSDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSNSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPVSPNSVLRMYRMAPHSPYDPLHLVPKMLSHPGTLGLDSRGAFIVHVPSAIYVWIGENCNLVMSNNARTAACQVIRYERAQGPIVNIKEGEETSEFWDALGSGQLLADHSNKVGAKDESSSSSENDKVCPGIGERKVNEYDLDFEIFHKALAGGVVPPFPLPGTGSETCLPARENGWGRLRRKFTCGFVKEFVTKLNCDTTQSNHGADMIIDASKEVKNTVSMSDPLSPLTPPCGSPVLLPYSPDGSSIGSMAKDVEHSVPLTDPSSPQTPKCGSPDSFSCFLGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIYLFTLVF* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0999 587 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Vvi7g0999 587 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Vvi7g0999 587 PANTHER MKPA PROTEIN 16 544 - -
Vvi7g0999 587 SMART VILL_6 268 362 IPR007122 GO:0051015
Vvi7g0999 587 CDD DSP 117 251 - -
Vvi7g0999 587 MobiDBLite consensus disorder prediction 507 533 - -
Vvi7g0999 587 MobiDBLite consensus disorder prediction 1 100 - -
Vvi7g0999 587 SUPERFAMILY Actin depolymerizing proteins 262 363 - -
Vvi7g0999 587 Gene3D Protein tyrosine phosphatase superfamily 88 258 IPR029021 -
Vvi7g0999 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 111 257 IPR029021 -
Vvi7g0999 587 Gene3D Severin 283 365 IPR029006 -
Vvi7g0999 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Vvi7g0999 587 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0999 Vvi-Chr7 14246614 14248377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0999 1 152 Protein tyrosine phosphatase (PTP) family AT3G55270 45.455 4.80e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0999 - - vvi:100254928 1120.53