Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0966 ATGAAACTTGGAATAGCAGAAATGGAAAGCAGCATGTGCCTTAGCAGTGCAATTTTGTCTCTGTGTTTGTCGTGTATGTGGTTGGGAGTAGTGCCTTACATTTCTGGTGCACAGACAGACACCATCAAACCTCGGGAAGAGCTTCAATTCTCGGAAAAATTACTGGTTTCTGCAAAAGGGACTTTTACTCTAGGCTTCTTCAGCCTGCAATCTGGCAGTTATTTAGGAATATGGAACACAACTGATCATTCTAACAAGAAAGTTTGGGTTGCTAACAGAGACAAGGCTATATCCGGCACCGATGCAAATCTCACGCTGGATGCCGATGGCAAATTGATGATCACTCATAGTGAGGGTGATCCAATTGTCCTGAATTCCAATCAAGTAGCCAGAAACTCAACAGCTACTCTACTTGATTCTGGAAATTTTGTTTTGAAAGAGTTCAATTCGGATGGATCTGTGAAGGAGAAACTATGGGAGAGTTTCGATAATCCTACAGACACCCTCCTGCCTGGGATGAAACTAGGCATCAACTTGAAAACCGGGCGAAACTGGTCACTTGCTTCATGGATAAGCGAACAAGTGCCTGCTCCTGGGACTTTTACTCTGGAATGGAATGGCACACAATTGGTGATGAAACGCCGAGGGGGCACCTACTGGAGCAGTGGAACCTTGAAAGATAGGAGCTTTGAGTTCATTCCTTTGTTGAATAACATCTACAGTTTTAACAGTGTTTCGAATGCAAACGAGATTTACTTTAGCTATTCAGTTCCAGAAGGAGTTGGTTCAGACTGGGTATTGACCTCGGAAGGGGGACTTTTTGACACTAATAGATCTGTATTTATGCAGGACGATCAGTGCGATAGGGATAAGGAATATCCAGGGTGTGCAGTGCAAAACCCACCCACTTGCAGGACTAGAAAAGACGGATTCGTGAAGGAATCGGTTCTCATATCAGGATCACCATCATCAATAAAAGAAAATTCGAGCTTGGGCCTTGGTGATTGTCAGGCTATATGCTGGAATAATTGTTCTTGTACTGCTTATAATAGTATACACACTAACGGAACTGGATGTCGGTTTTGGAGTACAAAATTTGCACAAGCCTACAAGGATGACGGAAATCAGGAGGAGCGCTATGTTTTATCCTCATCACGAGTGACGGGGAGCAGTTGGCGGATATGGGTCACTATTGCAGGAGTGGTACTTGTGGTCTTGTTACTTTTGGGCTCCTTATACTTTTTAACGAGAAAATTCAGAGGGGAGAGAGAAATGGAGGAAGCTATGCTGCCTGAATTGGCAACTTCAAACAGCTTTAGTGATTCAAAAGATGTTGAACATGATGGAACAAGGGGGGCTCATGATCTTAAACTGTTCAGTTTTGATTCTATTGTGGCTGCCACAAATTACTTTTCATCTGAAAATAAACTTGGAGAGGGTGGTTTTGGCCCGGTTTATAAGGGGAAATTACTTGAGGGGCACGAAATAGCAGTGAAGAGACTTTCAAGGGGCTCCAGCCAAGGATTGGTGGAGTTCAAAAATGAGATTAGACTGATCGCCAAACTCCAACACATGAATCTTGTTAGACTTCTGGGTTGCTGCATCCAGGGAGAGGAAAAGATGTTAATCTATGAGTTCATGCCCAACAAAAGCTTGGACTTCTTCCTCTTTGATCCTGATAGAAGAAAGATATTGGACTGGAAAAGACGTCACAATATCATTGAGGGGGTTGCGCAAGGACTTCTTTACTTGCATAAATATTCAAGACTAAGAATTATTCATAGAGATCTAAAAGTAAGTAACATCCTACTTGATCATGACTTGAACCCCAAAATTTCTGATTTTGGTATGGCCAGAATTTTTGGGCGAAATGCGTCAGAAGCAAATACAAATAGGATTGTTGGAACATATGGTTACATGGCACCCGAGTATGCCATGGAAGGAATTTTCTCAGTGAAATCAGATGTTTATAGCTTTGGGGTCCTACTGTTGGAGATTGTGAGCGGCCGGAAGAACAAAAGCTTTCATCATAACCACGGTGCCTTTGCCATAAACCTGGCAGGATACGCTTGGGAGCTATGGAAAGAAGGTACTAGCTTGGAGCTAGTGGATCCAATGCTGGAGGATTCCTACTCAACAACCCAAATGTTGAGATGCATTCATATTGCTCTCTTGTGTGTACAGGAGAGCGCAGCAGATAGGCCTACAATGTCAGATGTTATCTCCATGCTCACCAACGAATCTGTGTCCCTACCAGACCCAAATCTACCCTCATTTTCCGCTCATCATAAAGTGTCAGAACTAGACTCAAACAAAAGCGGGCCAGAGAGCTCTTCTGTAAATGTAACTATTTCAGAGATGGAAGGTCGGTAA 2373 0.4311 MKLGIAEMESSMCLSSAILSLCLSCMWLGVVPYISGAQTDTIKPREELQFSEKLLVSAKGTFTLGFFSLQSGSYLGIWNTTDHSNKKVWVANRDKAISGTDANLTLDADGKLMITHSEGDPIVLNSNQVARNSTATLLDSGNFVLKEFNSDGSVKEKLWESFDNPTDTLLPGMKLGINLKTGRNWSLASWISEQVPAPGTFTLEWNGTQLVMKRRGGTYWSSGTLKDRSFEFIPLLNNIYSFNSVSNANEIYFSYSVPEGVGSDWVLTSEGGLFDTNRSVFMQDDQCDRDKEYPGCAVQNPPTCRTRKDGFVKESVLISGSPSSIKENSSLGLGDCQAICWNNCSCTAYNSIHTNGTGCRFWSTKFAQAYKDDGNQEERYVLSSSRVTGSSWRIWVTIAGVVLVVLLLLGSLYFLTRKFRGEREMEEAMLPELATSNSFSDSKDVEHDGTRGAHDLKLFSFDSIVAATNYFSSENKLGEGGFGPVYKGKLLEGHEIAVKRLSRGSSQGLVEFKNEIRLIAKLQHMNLVRLLGCCIQGEEKMLIYEFMPNKSLDFFLFDPDRRKILDWKRRHNIIEGVAQGLLYLHKYSRLRIIHRDLKVSNILLDHDLNPKISDFGMARIFGRNASEANTNRIVGTYGYMAPEYAMEGIFSVKSDVYSFGVLLLEIVSGRKNKSFHHNHGAFAINLAGYAWELWKEGTSLELVDPMLEDSYSTTQMLRCIHIALLCVQESAADRPTMSDVISMLTNESVSLPDPNLPSFSAHHKVSELDSNKSGPESSSVNVTISEMEGR* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0966 790 SMART serkin_6 471 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0966 790 FunFam Receptor-like serine/threonine-protein kinase SD1-8 34 162 - -
Vvi7g0966 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Vvi7g0966 790 SMART blect_4 46 165 IPR001480 -
Vvi7g0966 790 ProSiteProfiles Bulb-type lectin domain profile. 39 158 IPR001480 -
Vvi7g0966 790 Gene3D Transferase(Phosphotransferase) domain 1 547 752 - -
Vvi7g0966 790 PIRSF SRK 10 278 IPR024171 GO:0004674
Vvi7g0966 790 PIRSF SRK 276 790 IPR024171 GO:0004674
Vvi7g0966 790 Pfam Protein tyrosine and serine/threonine kinase 474 744 IPR001245 GO:0004672|GO:0006468
Vvi7g0966 790 MobiDBLite consensus disorder prediction 764 790 - -
Vvi7g0966 790 ProSiteProfiles PAN/Apple domain profile. 304 385 IPR003609 -
Vvi7g0966 790 SUPERFAMILY Protein kinase-like (PK-like) 456 770 IPR011009 -
Vvi7g0966 790 CDD STKc_IRAK 477 746 - -
Vvi7g0966 790 Gene3D Phosphorylase Kinase; domain 1 444 546 - -
Vvi7g0966 790 Pfam PAN-like domain 304 366 IPR003609 -
Vvi7g0966 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 435 546 - -
Vvi7g0966 790 ProSiteProfiles Protein kinase domain profile. 471 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0966 790 Gene3D - 34 162 IPR036426 -
Vvi7g0966 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 192 IPR036426 -
Vvi7g0966 790 SMART ntp_6 306 384 IPR003609 -
Vvi7g0966 790 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 125 766 - -
Vvi7g0966 790 MobiDBLite consensus disorder prediction 771 790 - -
Vvi7g0966 790 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 547 752 - -
Vvi7g0966 790 CDD B_lectin 55 165 IPR001480 -
Vvi7g0966 790 Pfam D-mannose binding lectin 88 190 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0966 Vvi-Chr7 13362343 13365353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0966 382 759 Receptor kinase-like Gene Family AT4G05200 53.298 3.72e-136 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi7g0966 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0966 - - vvi:100253540 1521.91