Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0964 ATGAAGTTGATGAAAGGGACTAGCAATGGTGGTGAAAACCAGCTCGTGTCGACGTCGCTATACGTCGGTGGCCTAGAATCAAACGTCACCGACTCGCATCTCTTTGATTTGTTTGGTCAACTGGGTCCGGTGGTTTCCGTTCAGATTTGCTGCGACTTGAGCACTCGAAGATCACTCAATTATGGTTGTGTTAATCATGGCAATCCCCAAGACACCGTAAGGGCATTGGATGTGTTGAATTTCACTCATCTCAATGGAAAGCCAACTAGGATTATGTATTCCCATTGTGACCCTAGTGTCCGCAAAAGTGGAACTAGGAATATATTTATTAAGAATTTGGATAAAAGGGTTGACCACAAAGCATTGCGTGACACTTTTTCCACATTCGGTAACATCTTCTCATGTAAGGTAGCCGCTGATGCATCTGGATCATATAGTGGGCTGTGA 447 0.443 MKLMKGTSNGGENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFSCKVAADASGSYSGL* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0964 148 Gene3D - 97 147 IPR012677 -
Vvi7g0964 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Vvi7g0964 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Vvi7g0964 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 143 IPR000504 GO:0003723
Vvi7g0964 148 SUPERFAMILY RNA-binding domain, RBD 17 140 IPR035979 GO:0003676
Vvi7g0964 148 SMART rrm1_1 19 92 IPR000504 GO:0003723
Vvi7g0964 148 Gene3D - 5 96 IPR012677 -
Vvi7g0964 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 148 IPR000504 GO:0003723
Vvi7g0964 148 PANTHER RNA BINDING PROTEIN 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0964 Vvi-Chr7 13335850 13336296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0964 19 148 Eukaryotic Initiation Factors Gene Family AT4G34110 26.119 4.34e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0964 K13126 - vvi:100262903 221.09