Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0952 ATGGAAAGCAGCATGTGCCTTAGCAGTGCAATTTTGTCTCTGTGTTTGTCATGTATGTGGTTGGGAGTAGTGCCTTCCATTTCTGGTGCACAGACAGACACCATCAAACCTGGGGAAGAGCTTCAATTCTCGAAAAAATTACTGGTTTCTGCAAAAGGGACTTTTACTCTAGGCTTCTTCAGCCTGGAATCTGGCAGTTATTTAGGAATATGGTACACAACTGATGATTATCACAAGAAAGTTTGGGTTGCTAACAGAGACAAGGCTATATCCGGCACCGATGCAAATCTCACGCTGGATGCTGATGGCAAATTGATGATCACGCATAGTGGGGGTGATCCAATTGTCCTGAATTCCAATCAAGCACAATCGGTTCTCATATCAGGATCACCATCATCAATAAAAGAAAAATCGAGCTTGGGCCTTAGGGATTGTAAGGCTTTATGCTGGAATGATTGTTCTTGTACTGCTTATAATAGTTTATACACTAACGGAACTGGATGTCGGTTTTGGAGTACAAAATTTGCACTAGTCCTCAAGGATGACGCAAATCAGGAGGAGCTCTATGTTTTATCCTCATCACGAGTTACGGGGGAGAGAGAAATGGAGGAAGCTGCGCTGCTTGAATTGACAACTTCAAACAGCTTTAGTGATTCAAAAGATGTTGAACATGATGGAAAGAGGGGGGCTCATGATCTTAAACTGTTCAGTTTTGATTCTATTGTGGCTGCCACGAATAACTTTTCATCTGAAAATAAACTTGGAGAGGGTGGTTTTGGCCCGGTTTATAAGGGGAAATTACCTGAGGGGCAAGAAATAGCAGTGAAGAGACTTTCAAGGGGCTCCAACCAAGGATTGGTGGAGTTTAAAACTGAGATTAGACTGATCGTCAAACTCCAACACATGAATCTTGTTAGACTTTTGGGTTGCTACATCAAGGGAGAAGAAAAGATGTTAATCTATGAGTTCATGCCCAACAAAAGCTTGGACTTATTCCTCTTTGGTTTGAATACTTCCCTTTTTTCTTCCTTTTATCTGCATGACTTTTCCTTATGTTCTTACATGTCATCATCCAACTAG 1080 0.4148 MESSMCLSSAILSLCLSCMWLGVVPSISGAQTDTIKPGEELQFSKKLLVSAKGTFTLGFFSLESGSYLGIWYTTDDYHKKVWVANRDKAISGTDANLTLDADGKLMITHSGGDPIVLNSNQAQSVLISGSPSSIKEKSSLGLRDCKALCWNDCSCTAYNSLYTNGTGCRFWSTKFALVLKDDANQEELYVLSSSRVTGEREMEEAALLELTTSNSFSDSKDVEHDGKRGAHDLKLFSFDSIVAATNNFSSENKLGEGGFGPVYKGKLPEGQEIAVKRLSRGSNQGLVEFKTEIRLIVKLQHMNLVRLLGCYIKGEEKMLIYEFMPNKSLDLFLFGLNTSLFSSFYLHDFSLCSYMSSSN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0952 359 Gene3D - 26 197 IPR036426 -
Vvi7g0952 359 Pfam PAN-like domain 137 175 IPR003609 -
Vvi7g0952 359 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 113 IPR036426 -
Vvi7g0952 359 ProSiteProfiles Protein kinase domain profile. 248 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0952 359 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 120 - -
Vvi7g0952 359 Gene3D Phosphorylase Kinase; domain 1 209 323 - -
Vvi7g0952 359 SUPERFAMILY Protein kinase-like (PK-like) 233 338 IPR011009 -
Vvi7g0952 359 ProSiteProfiles Bulb-type lectin domain profile. 32 155 IPR001480 -
Vvi7g0952 359 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 212 323 - -
Vvi7g0952 359 SMART blect_4 39 137 IPR001480 -
Vvi7g0952 359 Pfam Protein tyrosine and serine/threonine kinase 251 333 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0952 Vvi-Chr7 13079425 13081589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0952 217 334 Receptor kinase-like Gene Family AT4G05200 55.932 1.16e-36 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi7g0952 PK_Tyr_Ser-Thr 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0952 - - vvi:104879888 441.039