Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0911 ATGGGAAGACAGAAGATCGAAATAAAAAAAATTGTGAAGAAAAGCTCCTTGGAGGTCACCTTCTCCAAGCGTCGAACAGGACTCTTCAAGAAGGCTGGCGAGCTTTGCGTTTTGTGCGGTGCTGAGGCCGCCGTCATCGTCTTCTCTCCGGGCAGGAGGGCCTTCGTCTTCGGCCACCCCTCCGCGGACGCTGTCATCGATCGCTTCCTCCATCGCGAGACCAACTCTCGTGCGCTTGTTCCGGCGGGACAGGTGCATGGGCACGTTCAGAGGCAATACTTGGAAGCTCTTGGAAGGCTGGAGGTGAAGAGGGAGCAAGAAGAGACGGTGGGGGGAGATGGGGAGGGTGGGTTTTGGTGGGACGCGCCCATTGAGAACATGGGGTTGAATGAACTGGAGCAGTTCAGGGGTTCCCTTGAGGAGCTGAGGAAGAAGGTGGCGGATCGAGTGGAGGAGATGACTATGATGATGATGATGGAGAGCGGTCCTTCTTCGACTGCCATGGTTGAATATGCAGCGCCACCGCAGGAGTATAATTCTTCTGGTGGTGTTCTGCATGGCCATGATTTGGCTGCACATGGTGTTCCTCATGGTTTCGATTTTGGGTTCGGTTTCGATGAACACCTTTTCTGA 633 0.545 MGRQKIEIKKIVKKSSLEVTFSKRRTGLFKKAGELCVLCGAEAAVIVFSPGRRAFVFGHPSADAVIDRFLHRETNSRALVPAGQVHGHVQRQYLEALGRLEVKREQEETVGGDGEGGFWWDAPIENMGLNELEQFRGSLEELRKKVADRVEEMTMMMMMESGPSSTAMVEYAAPPQEYNSSGGVLHGHDLAAHGVPHGFDFGFGFDEHLF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0911 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi7g0911 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi7g0911 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi7g0911 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi7g0911 210 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vvi7g0911 210 PANTHER MADS BOX PROTEIN 3 148 - -
Vvi7g0911 210 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Vvi7g0911 210 Coils Coil 132 152 - -
Vvi7g0911 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi7g0911 210 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vvi7g0911 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0911 Vvi-Chr7 11912375 11913007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0911 2 147 Type I MADS-box Gene Family AT5G60440 43.902 1.48e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi7g0911 SRF-TF 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0911 - - vvi:100853618 386.726