Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0904 ATGGACACGGTTTGCTTCTGGGTTTGCTTCTTTTTGTTGTTTTGGCTTGGAAATGTGGGTTTCTGCTATCAAGATGGGTTCTTGAGTTTATCTTGTGGCGCAACTGCAGACTTCGTTGATTCAACCAACATATCATGGGTCTCGGATAGTACTTATGTTGATACAGGCAACACTACCACCATTGACTTCATCGAGGGAACCTCCTCCTCACATGTACCGATTCGGTTTTTCCCAGATTCCAAAGGCCGCAAGTGTTACAGATTACCCGTGAAGAATGTGTCATCAGTGGTTCTTGTTAGAACCCAGTTTGTGTACAAGAACTATGATGGTCTGGCCAAACCCCCTGCATTCTCTGTTTCTCTAGGGACAGCTATTACCACCACTGCAAACCTCACTGTTTCTGATCCATGGACAGAAGAGTTTGTATGGTCAGTTAATCAAGACATCCTCCCATTGTGTTTACATGCCCTTCCAGGAGGTGGAGTTCCGGTTATATCATCACTTGAAGTCCGGCCTCTCCCTCAGAGAGCTTACACAAGTGGCATGGAAGATTTCCCCAATAAGTCCCTCAGGAAGTGTTATAGAATCAATTGTGGCTATGCTAATGGATCACTGAGGTACCCTTTGGATTCATATGATCGTATATGGGATGCAGATCAAAGCTTTTCACCATTCCATTTGTCAACTGGGTTCAACATTCAGCTCAGCTTCAATTTATCAAGTATTGAGGAGAGCCCTCCTCTGGCTGTTCTTCAAACTGCAAGAGTTTTGGCCAGGAGGGATGCATTGGCTTATTACTTTCCCCTTGATAAGCTAGGGGACTACTACATTGTCCTCTATTTTGCTGGAATTCTTCCTGTGTCTCCAACTTTTGATGTATTGATTAATGGAGATGTTGTATGGTCAAGTTACACTGTGAAAAACTCTGAAGCCACTGCTCTGTTCTTTACGCGAAAGGGAATCAAGAGCTTGAGCATCACATTGAAGAATATCAGCTTCAACCCTCTAATCAATGCAATTGAGGTGTATGAGATGGTTGATATTCCCTCAGAAACTTCCTCAACTACAGTTTCGGCACTTCAGGTTATTCAACAATCAACTGGTTTGGATCTTGGATGGCAAGATGATCCATGCTCTCCTACACCATGGGATCATATCAGCTGCCAAGGAAGTCTGGTTACTTCATTGGGGCTTCCCAACATTAACTTGAGGTCAATCAGTCCTACATTTGGTGACTTATTGGATCTTAGAACACTGGATTTGCACAACACATCACTTACAGGGAAGATACAGAACTTGGATAGCCTGCAACACCTTGAAAAACTGAATTTGAGTTTCAATCAGCTAACATCCTTTGGTTCTGATTTGGAGAATTTGATCAGCCTTCAAATTTTGGACTTGCAAAACAATAGTTTAGAGGGAACAGTTCCTGAGAGCTTGGGAGAGTTAAAGGACCTTCACCTATTGAATCTGGAAAACAATAAACTTCAAGGCACCCTCCCAGACTCTCTAAACCGAGAAAGTTTGGAAGTTAGATCATCAGGCAATTTGTGCCTTTCCTTCTCCATTTCAACATGTAGTGAGGTTCCATCCAATCCTTCAATTGAGACACCACAAGTTACCATCTTTAACAAAAAGCAGCATGATGATCATAACCTGAGAACAATTATACTTGGAGCGGTTGGTGGAGTTTTGTTTGCAGTTATTGTTACATCCCTGTTAGTGTTCTTGTACATGAGGAGAAAGAGAACTGAAGTCACATACTCAGAAAGGGCAGGAGTAGATATGAGAAACTGGAATGCAGCAGCAAGAATCTTTTCCCACAAAGAAATCAAAGCAGCTACAAACAACTTCAAGGAGGTTATAGGACGTGGTAGTTTCGGATCTGTTTACATTGGCAAGCTTCCAGATGGAAAACTAGTAGCTGTGAAGGTGCGGTTCGATAGAACACAACTTGGGGCTGATTCCTTTATCAATGAGGTGCATCTTTTGTCACAAATTCGTCATCAAAATCTTGTCAGTTTGGAAGGATTTTGTCATGAATCAAAGCAGCAAATTCTAGTCTATGAGTATTTGCCTGGTGGATCATTGGCTGACAATCTTTATGGTGCAAATGGTAGAAGGATAACTTTAAGCTGGGTTCGCAGACTGAAAATTGCTGTTGATGCTGCAAAAGGGTTGGACTATTTACACAATGGGAGCAATCCAAGAATCATACACCGTGATGTGAAGTGCAGTAATATCCTTTTGGACATGGAGATGAATGCCAAGGTCTGTGACTTTGGCCTTTCCAAGCAAGTAACACAGGCTGATGCAACTCATGTCACTACTGTTGTCAAGGGCACTGCTGGCTATCTTGATCCTGAATACTACTCCACCCAACAGCTTACCGAGAAAAGTGATGTCTACAGCTTTGGAGTTGTTCTTTTGGAGCTGATTTGTGGGCGAGAACCATTAAGTCACTCTGGAACTCCTGATTCCTTCAATTTGGTCTTATGGGCCAAGCCCTACCTGCAGGCAGGTGCATTTGAGATAGTGGATGAGAGCATAAAGGGAAATTTTGATGTGGAGAGCATGAGAAAGGCAGCCCTGATTGCATCAAGGAGTGTGGAGAGAGATGCAGCACAAAGGCCTGTGATGGCAGAGGTATTGGCAGAGCTCAAAGAGGCCTACAGCATTCAGCTTTCTTATCTAGCATCTTGTGGCCATCTGAATTAA 2718 0.4297 MDTVCFWVCFFLLFWLGNVGFCYQDGFLSLSCGATADFVDSTNISWVSDSTYVDTGNTTTIDFIEGTSSSHVPIRFFPDSKGRKCYRLPVKNVSSVVLVRTQFVYKNYDGLAKPPAFSVSLGTAITTTANLTVSDPWTEEFVWSVNQDILPLCLHALPGGGVPVISSLEVRPLPQRAYTSGMEDFPNKSLRKCYRINCGYANGSLRYPLDSYDRIWDADQSFSPFHLSTGFNIQLSFNLSSIEESPPLAVLQTARVLARRDALAYYFPLDKLGDYYIVLYFAGILPVSPTFDVLINGDVVWSSYTVKNSEATALFFTRKGIKSLSITLKNISFNPLINAIEVYEMVDIPSETSSTTVSALQVIQQSTGLDLGWQDDPCSPTPWDHISCQGSLVTSLGLPNINLRSISPTFGDLLDLRTLDLHNTSLTGKIQNLDSLQHLEKLNLSFNQLTSFGSDLENLISLQILDLQNNSLEGTVPESLGELKDLHLLNLENNKLQGTLPDSLNRESLEVRSSGNLCLSFSISTCSEVPSNPSIETPQVTIFNKKQHDDHNLRTIILGAVGGVLFAVIVTSLLVFLYMRRKRTEVTYSERAGVDMRNWNAAARIFSHKEIKAATNNFKEVIGRGSFGSVYIGKLPDGKLVAVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSLEGFCHESKQQILVYEYLPGGSLADNLYGANGRRITLSWVRRLKIAVDAAKGLDYLHNGSNPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGAFEIVDESIKGNFDVESMRKAALIASRSVERDAAQRPVMAEVLAELKEAYSIQLSYLASCGHLN* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0904 905 CDD TM_EGFR-like 555 583 - -
Vvi7g0904 905 SUPERFAMILY L domain-like 358 506 - -
Vvi7g0904 905 Gene3D Transferase(Phosphotransferase) domain 1 692 897 - -
Vvi7g0904 905 SUPERFAMILY Protein kinase-like (PK-like) 599 887 IPR011009 -
Vvi7g0904 905 PANTHER OS07G0107800 PROTEIN-RELATED 454 891 - -
Vvi7g0904 905 Gene3D - 191 346 - -
Vvi7g0904 905 Gene3D Ribonuclease Inhibitor 355 528 IPR032675 -
Vvi7g0904 905 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Vvi7g0904 905 Pfam Protein kinase domain 619 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0904 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vvi7g0904 905 ProSiteProfiles Protein kinase domain profile. 616 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0904 905 FunFam serine/threonine-protein kinase PBS1-like 585 691 - -
Vvi7g0904 905 SMART LRR_typ_2 483 507 IPR003591 -
Vvi7g0904 905 SMART LRR_typ_2 436 458 IPR003591 -
Vvi7g0904 905 SMART LRR_typ_2 459 482 IPR003591 -
Vvi7g0904 905 Gene3D Phosphorylase Kinase; domain 1 580 691 - -
Vvi7g0904 905 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Vvi7g0904 905 Pfam Malectin-like domain 30 344 IPR024788 -
Vvi7g0904 905 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Vvi7g0904 905 SMART serkin_6 616 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0904 905 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 692 898 - -
Vvi7g0904 905 CDD STKc_IRAK 622 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0904 Vvi-Chr7 11795348 11800259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0904 12 903 Receptor kinase-like Gene Family AT5G48740 66.221 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi7g0904 Malectin_like 5.4e-57 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0904 - - vvi:100263624 1799.25