Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0903 ATGGTGTCGGGATCAGGGATCTGCGCCGGGAGAGTGGTGGTGGACGCAAGGCACCACATGCTGGGGAGGCTGGCGTCGATATTGGCGAAAGAGTTGCTGAATGGGCAGAAAGTGGTGGTAGTGAGATGCGAGGAGATCTGCCTCTCTGGTGGACTCGTTCGCCAGAAGATGAAGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAGGTTTTGAGGCTTCAGGCTGGACACAAGTACTGCTTGCTTGGCCGGCTTTCCTCAGAGGTTGGATGGAACCATTACGATACCATCAGAGAGCTGGAGAAGAAAAGAAAAGAGAGAGCTCAGCTGGCATATGAGAGGAAGAAGCAACTGACTAAACTTAGGGTGAAGGCTGAGAAAGTGGCTGAGGAGAAGCTTAGCACCCAACTAGACATCCTTGCTGCTGTTAAGTACTAA 621 0.533 MVSGSGICAGRVVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEKKRKERAQLAYERKKQLTKLRVKAEKVAEEKLSTQLDILAAVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0903 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 NCBIfam 50S ribosomal protein L13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vvi7g0903 206 Gene3D - 156 206 - -
Vvi7g0903 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vvi7g0903 206 FunFam 60S ribosomal protein L13a 155 206 - -
Vvi7g0903 206 PANTHER RIBOSOMAL PROTEIN L13 2 188 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 Pfam Ribosomal protein L13 12 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi7g0903 206 Gene3D Ribosomal protein L13 9 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0903 Vvi-Chr7 11788507 11791611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0903 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 90.291 2.09e-139 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0903 K02872 - vvi:100261957 404.445