Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0900 ATGAGCTGCTTCCCGTGTTTTTCCTCGCATGAAAAGAAATCAGCTAAGAGGAGCACCAACACCAGGAACGGGGACTTGCCTCCTGCTGCAGCTGCAGTTACAGCTCCTATTAAACAACCCGTTAGACCACCGCAGCCGGTGAATCCTAAGCCACAGAGCATAGCTGAAACTACAGATACAAATGATGCCCCTGCTGATGGAAAGAATATTGGGTCGCAAATTTTCACTTTCCGAGAGCTGGCCTCAGCAACCAAGAATTTCCGGCAGGAATGTCTAGTGGGGGAAGGTGGATTTGGAAGAGTTTATAGAGGCCAACTCGAGCAAACTGGCCAGATTGTAGCTGTGAAGCAACTTGACAGGAATGGATTGCAAGGAAACAAAGAGTTTCTTGTGGAGGTTTTGATGTTGAGCCTCCTGCACCATGAAAATCTGGTAAATCTTATAGGATATTGTGCTGATGGAGAGCAAAGACTTCTGGTATATGAGTACATGCAATACGGATCTTTGGAAGACCATCTACTTGATGTTCCACCAGATCAAAAGCCATTAGATTGGTTCACCAGAATGAAGGTAGCACTAGGTGCTGCCAAAGGTTTGGAATATCTTCATGACAAGGCCAACCCCCCTGTCATTTATCGCGATTTGAAGTCCTCCAACATCTTGCTGGACAAAGATTTCAATGCAAAACTCTCTGATTTCGGGCTAGCAAAGCTCGGAACTGGTGATGACAAGATCCATGTATCTTCAAGGGTAATGGGAACATATGGTTATTGTGCCCCAGAATATCAACGAACAGGTCAACTGACTCTAAAGTCTGATATATACAGTTTTGGAGTTGTTTTACTAGAGTTGATCACTGGAAGGAGAGTGATTGATCCCACAAAGCCAGCCAAGGAGCAAAATCTAATCAACTGGGCAGAACCAATATTTAAGGACCCAAGTTCATTCCCACAACTTGCTGATCCACATCTTCAAGGAAACTACCCGAGGAGAGGACTGAACCAAGCAGTTGGGATTGCAGCGATGTGTCTCCAGGAGGAACCAGCAGTCCGTCCCTTGATCAGCGATGTGGTTTCTGTTCTCAGTTTCCTTTCCGTGGCTCCAGAGACAGGCGTTCCTCTACCTCTGCCCACTCCCCCGACTGATAACACGACGAGCACAAATGAAAATGATCGGGAAGATATCAGAAGGGAACGTGAACGAGAAGTAGCGGAAGCCATGGAGTGGGGAACAAATTCAAGGAACCACATGAGACCACAGGGCGGAAGTGATTCTACAATGTAA 1284 0.4642 MSCFPCFSSHEKKSAKRSTNTRNGDLPPAAAAVTAPIKQPVRPPQPVNPKPQSIAETTDTNDAPADGKNIGSQIFTFRELASATKNFRQECLVGEGGFGRVYRGQLEQTGQIVAVKQLDRNGLQGNKEFLVEVLMLSLLHHENLVNLIGYCADGEQRLLVYEYMQYGSLEDHLLDVPPDQKPLDWFTRMKVALGAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGTGDDKIHVSSRVMGTYGYCAPEYQRTGQLTLKSDIYSFGVVLLELITGRRVIDPTKPAKEQNLINWAEPIFKDPSSFPQLADPHLQGNYPRRGLNQAVGIAAMCLQEEPAVRPLISDVVSVLSFLSVAPETGVPLPLPTPPTDNTTSTNENDREDIRREREREVAEAMEWGTNSRNHMRPQGGSDSTM* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0900 427 FunFam Serine/threonine-protein kinase PBS1 164 372 - -
Vvi7g0900 427 MobiDBLite consensus disorder prediction 387 407 - -
Vvi7g0900 427 MobiDBLite consensus disorder prediction 1 68 - -
Vvi7g0900 427 SUPERFAMILY Protein kinase-like (PK-like) 73 388 IPR011009 -
Vvi7g0900 427 Pfam Protein kinase domain 89 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0900 427 Gene3D Phosphorylase Kinase; domain 1 59 163 - -
Vvi7g0900 427 MobiDBLite consensus disorder prediction 51 67 - -
Vvi7g0900 427 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0900 427 PANTHER OS07G0668900 PROTEIN 3 368 - -
Vvi7g0900 427 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Vvi7g0900 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vvi7g0900 427 MobiDBLite consensus disorder prediction 369 427 - -
Vvi7g0900 427 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
Vvi7g0900 427 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0900 427 CDD STKc_IRAK 93 361 - -
Vvi7g0900 427 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vvi7g0900 427 MobiDBLite consensus disorder prediction 413 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0900 Vvi-Chr7 11636036 11638184 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0900 1 418 Glycoside Hydrolase AT3G07070 65.647 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi7g0900 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0900 - - vvi:100248308 794.653