Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0893 ATGGCACAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTGCTCAAAAGAAAATTGCATGCCTCTGCAAAAGCTTTCATGACTGAAGGGAAGGTTGCCACAGATCCAGTGGCAATTGATGCACCTGGGGGATTTCTCTTTGAATGGTGGTCTGTCTTTTGGGACATCTTCATTGCGAGGACAAATGATAAACATTCCGAGGCTGCCGCAGCTTACATAGAGGCACAACAAATGAAGGCAAGGGAGCAGCAACAACAACAACAGCTGCAAATGCAGCAGTTGCAATTCATGCAGCACCGAACTGCTCAGCTACAGCGAAGGGATCCAAATCATCCTCCCCTTGGAGGTTCCATGAATGCTATAAATTCTGAAGGAATGATGGGTCAGTCATCAGCCAGTGTATTGGCCATGAAAATGTATGAAGAACGTATGAAACACCCTCATTCAATGGATTCAGAAACATCTCCAGCTCTAATTGATGCCAACAGGATGGCCCTTCTCAAATCAGCCACCAATCATCAAAGCCAGTTGGTACAAGGTAATTCTGGCAGCATGTCTGCGGCCTTGCAACAAATCCAGGCACGAACTCAGCTGACCCCTGACATCAAAGGCGAAGTTAACTTGGGTGCTACTCAAAAATCTTTGCCTATGGATCCATCAATTTACGGGCCAGCAATTTTGCAATCAAAATCAGGACTAGGTGGTGCAGGATTAAATCAAGGTGTCACTGGTCTTCCATTAAAGGGTTGGCCTCTAACTGGAATTGAGCAATTACGACCAAGTTTAGGTGTTCAAGTACAAAAGCCTAATATACCAACCCAAAACCAGTTTATTTTGGCATCTCAACAACAGCAGGTCTTAGCACATGCTCAGGCACAAAGCAATCTTGGAAATTCACCTAACTATGGAGATATGGATCCCCGTAGGTTGTGTGGAATACCCAGGGGTAGCTTGAATACAAAAGATGGTCAATCCGCACGAAATGATGGATCTATATGCTCTCCTGTGCAATCAAGTTCACCAAAGATGAAGGTGGCCCAGATGCAACACTCTTCCTCTCAACAACTGGACCAGTTGCAGCAGCAGCAAATGCAGCAGAATAACAGAAAAAGGAAACAACATTCTTCTTCTGGACCTGCTAACAGTACTGGCACGGGAAATACAGTTGGTCCTTCACCCAACTCTCCACCATCAACTCACACTCCTGGTGATGGAATGACTATGGCAAGTAGCCTCCAGCATGTTAACAGTGTGCCAAAAAGCCTAATGATGTATGGTCCAGATGGGACAGGAGGTCTTGCATCATCTTCAAATCTGCTGGACGACATGGAACATTTTGGAGATATTGGTTCTCTAGATGATAATGTTGAATCATTTCTGTCACATGATGGAGGTGATGGTAGGGATCTATATGGCACAACTGAGCTTAAAAAAGAGTCTTCTAAGGGTTTCACCTTTGCTGAAGTTGGTTGTTTAAGGGCCAGCAATGGCAAAGTTACCTGCTGTCATTTTTCTTCAGATGGGAAGTTTCTAGCTAGTGCCGGACATGACAAAAAGGCTGTTCTTTGGAACATGGATACCCTGCAAAGAGAGAGCACCCCTGAAGAGCACCAGTTTGTAATTACAGATATCCGTTTTAGGCCAAATTCAACTCAACTGGCAACAGCTTCATATGATAAGTCTGTGCGATTATGGGATGCAGCCAAGCCAACCTACTGTGTGAATGCTTATACTGGGCACGGTTCACATGTTATGTCCCTGGATTTCCACCCTAAGAAGACTGATCTTTTCTGTTTTAGTGATAGTAATAATGAAATTCGTTATTGGAATATATCTCCGTTCTCATGCACTCGTGTTTTCAAGGGAGGTAATGTGCAAGTTAGATTTCAACCAAGAATTGGACATCTTCTAGCTGCAGCAATGGATAAAGTGGTGTCCATCTTTGATGTTGAAACTGACAGGCAAATACACTCACTCCAGGGGCACTCAGAAATGGTAAATTACCTTAGCTGGGATGCAAATGGAGAATTTATGGCATCTGTCAGTCCAGACTTGGTGAAAGTTTGGTCTATAGCTTCAGGAGAGTGCATTCATGAGCTTAGCTCCAATGGAAGCCAATTCCATTCTTGTGTTTTTCATCCAAGTTATCCAACTCTTTTGGTTATTGGTGGAATCCGGTCTCTGGAGTTGTGGAACATGGCTGAGAACAAGTGCATGACGGTTCCAGCACATGAGAGTATAGTTGCAGCTTTGGCGCAGTCACCTGTCAATGGAATGGTTGCTTCTGCAAGCCATGACAGCTCTGTCAAAATATGGAAATAA 2340 0.438 MAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNDKHSEAAAAYIEAQQMKAREQQQQQQLQMQQLQFMQHRTAQLQRRDPNHPPLGGSMNAINSEGMMGQSSASVLAMKMYEERMKHPHSMDSETSPALIDANRMALLKSATNHQSQLVQGNSGSMSAALQQIQARTQLTPDIKGEVNLGATQKSLPMDPSIYGPAILQSKSGLGGAGLNQGVTGLPLKGWPLTGIEQLRPSLGVQVQKPNIPTQNQFILASQQQQVLAHAQAQSNLGNSPNYGDMDPRRLCGIPRGSLNTKDGQSARNDGSICSPVQSSSPKMKVAQMQHSSSQQLDQLQQQQMQQNNRKRKQHSSSGPANSTGTGNTVGPSPNSPPSTHTPGDGMTMASSLQHVNSVPKSLMMYGPDGTGGLASSSNLLDDMEHFGDIGSLDDNVESFLSHDGGDGRDLYGTTELKKESSKGFTFAEVGCLRASNGKVTCCHFSSDGKFLASAGHDKKAVLWNMDTLQRESTPEEHQFVITDIRFRPNSTQLATASYDKSVRLWDAAKPTYCVNAYTGHGSHVMSLDFHPKKTDLFCFSDSNNEIRYWNISPFSCTRVFKGGNVQVRFQPRIGHLLAAAMDKVVSIFDVETDRQIHSLQGHSEMVNYLSWDANGEFMASVSPDLVKVWSIASGECIHELSSNGSQFHSCVFHPSYPTLLVIGGIRSLELWNMAENKCMTVPAHESIVAALAQSPVNGMVASASHDSSVKIWK* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0893 779 Coils Coil 78 101 - -
Vvi7g0893 779 MobiDBLite consensus disorder prediction 324 415 - -
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 747 779 - -
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Vvi7g0893 779 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 779 IPR044716 GO:0003714
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 572 - -
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Vvi7g0893 779 SMART Lish 8 40 IPR006594 GO:0005515
Vvi7g0893 779 MobiDBLite consensus disorder prediction 300 415 - -
Vvi7g0893 779 Pfam WD domain, G-beta repeat 579 616 IPR001680 GO:0005515
Vvi7g0893 779 Pfam WD domain, G-beta repeat 497 530 IPR001680 GO:0005515
Vvi7g0893 779 Pfam WD domain, G-beta repeat 539 572 IPR001680 GO:0005515
Vvi7g0893 779 Pfam WD domain, G-beta repeat 661 695 IPR001680 GO:0005515
Vvi7g0893 779 Pfam WD domain, G-beta repeat 745 779 IPR001680 GO:0005515
Vvi7g0893 779 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Vvi7g0893 779 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vvi7g0893 779 CDD WD40 494 779 - -
Vvi7g0893 779 Gene3D - 472 630 IPR015943 GO:0005515
Vvi7g0893 779 SMART WD40_4 740 779 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 576 616 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 533 572 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 658 696 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 699 738 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 619 655 IPR001680 GO:0005515
Vvi7g0893 779 SMART WD40_4 491 530 IPR001680 GO:0005515
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 625 IPR001680 GO:0005515
Vvi7g0893 779 PRINTS G protein beta WD-40 repeat signature 766 779 IPR020472 -
Vvi7g0893 779 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Vvi7g0893 779 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
Vvi7g0893 779 Gene3D - 631 779 IPR015943 GO:0005515
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 705 IPR001680 GO:0005515
Vvi7g0893 779 Pfam LisH 10 36 IPR006594 GO:0005515
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 779 IPR001680 GO:0005515
Vvi7g0893 779 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Vvi7g0893 779 SUPERFAMILY WD40 repeat-like 492 779 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0893 Vvi-Chr7 11535486 11547072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0893 574 778 Miscellaneous Gene Families AT5G08390 22.857 2.23e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vvi7g0893 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0893 - - vvi:100255105 1496.87