Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0891 ATGCCTCCATCAATGGAAGATCAGTTCTTGGATGGCGCTGATTCGGATGAGATCTCCAGAAGCTTTACCTGCTGCGTTTGTTTGGATCTCCTGTACAAGCCGATTGTGCTGGCTTGTGGTCATATTTCCTGTTTCTGGTGTGTCCATTATTCCATGGATGGCGCACATGAGTCTCATTGTCCAATTTGTAGGAATCCATATAGTCACTTCCCAACCATCTGTCAGATGCTTCACTTCATGCTCTTGAAGATGTATCCTGTTGCCTACAAAAGACGGGAGAAGCAAACTCTAGAAAGAGAAGAGGAAACACGCTGCTTCTCTCCACGGTTTGATGCTTATGGAGGTGGATCACATACTTATAAAAAATTGAAGATCGAAGCAGATCCTGCAGATCCTTCCATCACAGTTTTTGAGTTTAAATTGTGTCCAGATTCTTCTTCCAATAGGGTAAAGAAACATTTTGCTGATTTAATGCAACGACAACCTGTGTCGCTGCCTCAAGATTTTGTCATTCCTATTTCCAAACAAACCTCTGGTGGAAATCCTCAAGGGGCAACACTTGCTGATGAAGAGAATGTTGTGCTTAAAAATAATCTTGATCAAACTTGTGAGCAGCTTTCAATCGCTGATGTACAGTGTACTGCATGCAAGCAGCTGCTGTTTCGACCTGTAGTTCTGAACTGTGGCCATGTATATTGTGAAACTTGTTTCAATATACCAGTGGATGAGAGGTTTAGATGCAAGGTTTGCCAGGTTCTGCATCCAAGTGGGTTTCCAAAAGTTTGTTTGGAACTTGATAACTTCTTGGAGGAACAATTTCCTGAAGAATATGCATTGAGAAGAGAAGCTGTTCAGCTCAAAGCAGTTCATCTGCATGATGCTCCAAGTACCTGGTCAAAAAATTCTGGCATACAAGGTTTCAAGTGGTCCTCGGTGCCTAAAGAGGAATATTCTACATGGTTGAGGGATAATGGGCCAAAGATTCATCCTTGTGCTGGTTGTGATTCTTGTGGGATGTATCCGATAGTTGGGGACCGATACAGATGCAAAGATTGCAAGGAGAAAATAGGGTTCGACCTTTGTGGAGATTGCTACAATACCAACTCCAAGCTTCCAGGCCGGTTTAATCAGCAGCATACCCCAGAGCACAAATTTGAGTTGGTGAATTGGAAATTGAAACAAGAAATGATGAGGCTGATGGTAGAGCAACTAGGAGATGGTTTTGCTGCTCCCTATTTCTCTGGTATTAGTTTAGAACAACCGGGAGATCCTACTGCTGCTTTTGTCTCACTAGATGATGCTGAGGAGACAGCAGAAAATGCTGCTGCCATTGTTTTAGATGATGATGCTGAGGAGACTGCAGAAAATGATGTGAATGGCCTGGCTGCCTCTGATGCTGCTCCGGAGCTATAA 1413 0.4331 MPPSMEDQFLDGADSDEISRSFTCCVCLDLLYKPIVLACGHISCFWCVHYSMDGAHESHCPICRNPYSHFPTICQMLHFMLLKMYPVAYKRREKQTLEREEETRCFSPRFDAYGGGSHTYKKLKIEADPADPSITVFEFKLCPDSSSNRVKKHFADLMQRQPVSLPQDFVIPISKQTSGGNPQGATLADEENVVLKNNLDQTCEQLSIADVQCTACKQLLFRPVVLNCGHVYCETCFNIPVDERFRCKVCQVLHPSGFPKVCLELDNFLEEQFPEEYALRREAVQLKAVHLHDAPSTWSKNSGIQGFKWSSVPKEEYSTWLRDNGPKIHPCAGCDSCGMYPIVGDRYRCKDCKEKIGFDLCGDCYNTNSKLPGRFNQQHTPEHKFELVNWKLKQEMMRLMVEQLGDGFAAPYFSGISLEQPGDPTAAFVSLDDAEETAENAAAIVLDDDAEETAENDVNGLAASDAAPEL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0891 470 CDD ZZ_PCMF_like 332 388 - -
Vvi7g0891 470 ProSiteProfiles Zinc finger ZZ-type profile. 329 393 IPR000433 GO:0008270
Vvi7g0891 470 SUPERFAMILY RING/U-box 210 273 - -
Vvi7g0891 470 PANTHER UNCHARACTERIZED 16 402 - -
Vvi7g0891 470 FunFam E3 ubiquitin-protein ligase PRT1 15 110 - -
Vvi7g0891 470 Pfam RING-type zinc-finger 213 237 IPR027370 -
Vvi7g0891 470 SUPERFAMILY RING/U-box 321 388 - -
Vvi7g0891 470 MobiDBLite consensus disorder prediction 448 470 - -
Vvi7g0891 470 SMART ring_2 24 63 IPR001841 -
Vvi7g0891 470 SMART ring_2 213 250 IPR001841 -
Vvi7g0891 470 ProSiteProfiles Zinc finger RING-type profile. 24 64 IPR001841 -
Vvi7g0891 470 FunFam E3 ubiquitin-protein ligase PRT1 200 295 - -
Vvi7g0891 470 SUPERFAMILY RING/U-box 17 73 - -
Vvi7g0891 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 294 IPR013083 -
Vvi7g0891 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Vvi7g0891 470 FunFam E3 ubiquitin-protein ligase PRT1 323 388 - -
Vvi7g0891 470 Pfam Zinc finger, ZZ type 332 369 IPR000433 GO:0008270
Vvi7g0891 470 Pfam Zinc finger, C3HC4 type (RING finger) 23 68 - -
Vvi7g0891 470 ProSiteProfiles Zinc finger RING-type profile. 213 251 IPR001841 -
Vvi7g0891 470 SMART zz_5 328 377 IPR000433 GO:0008270
Vvi7g0891 470 Gene3D - 326 389 IPR043145 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0891 14 64 C3H Transcription Factor Family AT1G74990 38.462 1.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0891 - - vvi:100260196 991.875