LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0879	ATGGCGGAGATTGCCGTCAACCTCGTCATCGACAAGTTGCTCCCATTACTAGATCAAGAAGCCAGACTATTGGGAGGCGTCCACACACAAGTTGAAGACATTAAAACAGAGCTACTATATATTCAAGCTTTCCTAATGGATGCAGATGCAAAGGCGGAGAAAGCAGATGTCAGCCAAGGCCTTAAAACTTGGATTCAAGACTTAAGGGAGACTGCTTATTCCATAGAAGATGTCATCGATGAATACTTGCTTCACTTGGGAAATCCAAATCGACGGCATGGTTTCATTGGTTTCCTTTACAAAGTTGCTCGCTTGATAAAAAAATTAATACGACGCCATGAGATAGCCTCCAAGATCCATGATATCCAGAAAAAGGTTCATAAGCTCAGAGAAATAAGTTCAAGTAATGGCTTTAATAAACCATTTGAATCAGGTTCAACCAGCAGCAAAGGAAGTGCTCCACAGCCTGATCCTCCAGTGACTTCTCTTTTCATCGACGACTCTGAAATTGTTGGCATCGGATCTCAGAAAAATGAACTGATAAGCAGGCTGGTGAAGGGAACTCTAAAACGAACTGTGATTTCGGTTGTCGGAATGGGTGGACTTGGCAAAACCACTCTTGCCAAGAAGGTTTATGCAAATATGAGAGTGGTGAAACACTTTGATTGCCATGCTTGGATCACTGTGTCTCAGTCTTTCCAGATGAAGGAGCTGCTGCGCCGTATGATGGAGAAATTCTATGAAGCAAGGAAGGAAAAAGTTCCTGAGGATATCAACAGAATGGACAACGAGTCGCTGATTACCCAAGTCAGGGAATATTTACAAGATAAGAGGTATGTGGTTGTTTTTGACGATGTATGGAAAGCAGGATTTTGGGAAAGTATTACACCTGCGTTACCAGAAAATAAAAAAGGCAGCAGGATAATAATCACTACCCGTAAAGATGACGTAGCCACTTGTTGTAAGGATGATTACATCCACAGGCTGCCACATCTTTCACCTGATAGTTCCCGGGAACTCTTTTGCAAGAAGGCATTTCAGGGTAGATGTCCCCCAGAATTAAAGAAATTGTCTGATGATATTGTCAAAAGATGTGGAGGACTGCCACTAGCAATTGTAGCAATTGGTGGTCTTTTGTCAAGAAAAGAGAAGATTGTGTCCTTATGGAAAAAATTCAGTGACAGCCTTGGGTCTGAGTTGGAAAGTAATTCCCATCTTGAAAGTATCAATACCATTCTCTCTCTCAGTTATTATGATCTGCCTTACCACCTCAAGTCATGTTTCTTGTATTTGGCAATCTTTCCAGAGGACTACACAATTAAATGTGGGATCCTTACTCGGCTGTGGATTGCTGAGGGTTTTGTAAAGACGAAGAGAGGTGTGACGCTAGAAGAGACTGCAGAAGGATTCTTGACTGAGCTCATACGCAGGAGCTTAGTTCAAGTGTCAGACGTATATATCGATGGAAATATTAAAAGATGCCACATTCATGACTTGATGCGTGAGATTATTCTCAAAAAGGCTGAGGAGTTGAGTTTTTTTTCTGTAATGGCTGGAGAAGCCTCGTGTTTTGATGGAAGATTTAGGCGCCTATCAGTTCAGAATAGCTCAAATAATGTGCTAGACATTCCCAGTAAAAAGTCTCACATCCGCTCCATTTTTCTTTACAACTCTGAGATGTTTTCTCTGGGCACATTGGCTTCAAAATTTAAGTTTCTGAAAGTATTGGATCTTGGTGGTGCTCCTTTGGAGAGAATTCCTGAAGATTTGGGAAATCTGTTGCATTTGAGATACTTAAGCCTGAGGAAGACAAGAGTGAGGATGCTTCCAAGGTCCATAGGCAAACTACAAAACCTACAGACTTTGGATCTGAAATATTCCCTTGTAGAAGATCTTCCTGTTGAGATCAATAGGCTTCAAAAGCTGTGCAATATTCTATGCTTTGATTATGCTTATAAGGCTGATTTGAGATGGGATTCTGTTAGAGGAGTGCATGTAAAGGAGGGTATTGGGGGTTTGGAAGACTTGCAGAAGCTGACTGCTGTGGACGTAACTCATGGGGTGCAGATAATAACAGAGTTGGGAAAGCTGAGGCAGTTGAGGAAGCTGGGTATTACAAAACTTTCTAGAGGAAATGGGCAGCGTTTGTGTGCCTCCATTTCAAACATGGTCCACCTTAAATATTTGTCTGTTTGTTCGCTGAGTGAAGATGAGATTCTGGATATACAGTATATGTCAAATCCACCTCCGTTTCTTTCAACTGTCTACTTAATGGGGCGTTTGGAGAGGTTACCTGACTGGATTTCTAAACTTCCAAGTTTAGTAAGAGTAATCTTAACTCGTTCTAACTTAGCGAACGATCCAATGCAAGTCTTTCAAGCCCTGCCTAGCCTGCAGGCGCTTTCCCTATTCCAAACCTCTGTCGTTGAGCAATTGTGTTTTGGGGCAACGGGGATTCAGAAACTTAAGAGGCTCCGTATCTATGACTTGATTGGACTGAAGAGGGTGAAAATAGAAGATGGAACATTGCCCCTTCTGGAGGAGCTTATGATTGGGCGTTGCCCACAACTGGAGGAGCTGCCCTCTGGCATCCGCCACCTCAGTAAGCTCACAACTCTTACATTTTTTGATTTGCAGGAAGAATTGAGACTTGGTATGATACGCGACCAAGGCAGAAATTTTGAGATTGTTAAGCACATTCCATACATCCATTTCTTCGAGAGCTAG	2727	0.4228	MAEIAVNLVIDKLLPLLDQEARLLGGVHTQVEDIKTELLYIQAFLMDADAKAEKADVSQGLKTWIQDLRETAYSIEDVIDEYLLHLGNPNRRHGFIGFLYKVARLIKKLIRRHEIASKIHDIQKKVHKLREISSSNGFNKPFESGSTSSKGSAPQPDPPVTSLFIDDSEIVGIGSQKNELISRLVKGTLKRTVISVVGMGGLGKTTLAKKVYANMRVVKHFDCHAWITVSQSFQMKELLRRMMEKFYEARKEKVPEDINRMDNESLITQVREYLQDKRYVVVFDDVWKAGFWESITPALPENKKGSRIIITTRKDDVATCCKDDYIHRLPHLSPDSSRELFCKKAFQGRCPPELKKLSDDIVKRCGGLPLAIVAIGGLLSRKEKIVSLWKKFSDSLGSELESNSHLESINTILSLSYYDLPYHLKSCFLYLAIFPEDYTIKCGILTRLWIAEGFVKTKRGVTLEETAEGFLTELIRRSLVQVSDVYIDGNIKRCHIHDLMREIILKKAEELSFFSVMAGEASCFDGRFRRLSVQNSSNNVLDIPSKKSHIRSIFLYNSEMFSLGTLASKFKFLKVLDLGGAPLERIPEDLGNLLHLRYLSLRKTRVRMLPRSIGKLQNLQTLDLKYSLVEDLPVEINRLQKLCNILCFDYAYKADLRWDSVRGVHVKEGIGGLEDLQKLTAVDVTHGVQIITELGKLRQLRKLGITKLSRGNGQRLCASISNMVHLKYLSVCSLSEDEILDIQYMSNPPPFLSTVYLMGRLERLPDWISKLPSLVRVILTRSNLANDPMQVFQALPSLQALSLFQTSVVEQLCFGATGIQKLKRLRIYDLIGLKRVKIEDGTLPLLEELMIGRCPQLEELPSGIRHLSKLTTLTFFDLQEELRLGMIRDQGRNFEIVKHIPYIHFFES*	909

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0879	908	PRINTS	Disease resistance protein signature	614	630	-	-
	Vvi7g0879	908	PRINTS	Disease resistance protein signature	273	287	-	-
	Vvi7g0879	908	PRINTS	Disease resistance protein signature	193	208	-	-
	Vvi7g0879	908	PRINTS	Disease resistance protein signature	365	379	-	-
	Vvi7g0879	908	Gene3D	-	331	416	IPR042197	-
	Vvi7g0879	908	Pfam	Rx N-terminal domain	5	91	IPR041118	-
	Vvi7g0879	908	Pfam	NB-ARC domain	176	417	IPR002182	GO:0043531
	Vvi7g0879	908	FunFam	Probable disease resistance protein At1g61300	156	325	-	-
	Vvi7g0879	908	PANTHER	DISEASE RESISTANCE PROTEIN RP	31	854	IPR044974	GO:0006952
	Vvi7g0879	908	Gene3D	-	417	508	IPR036388	-
	Vvi7g0879	908	Gene3D	-	161	327	IPR027417	-
	Vvi7g0879	908	CDD	RX-CC_like	2	131	IPR038005	-
	Vvi7g0879	908	FunFam	Probable disease resistance protein At1g63360	417	506	-	-
	Vvi7g0879	908	MobiDBLite	consensus disorder prediction	135	158	-	-
	Vvi7g0879	908	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	155	431	IPR027417	-
	Vvi7g0879	908	Gene3D	Ribonuclease Inhibitor	532	900	IPR032675	-
	Vvi7g0879	908	MobiDBLite	consensus disorder prediction	135	156	-	-
	Vvi7g0879	908	SUPERFAMILY	L domain-like	496	878	-	-
	Vvi7g0879	908	Gene3D	-	4	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0879	Vvi-Chr7	11094792	11097518	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0879	169	627	WRKY Transcription Factor Family	AT5G45050	24.224	4.80e-11	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0879	K13457		-	vvi:100258480	1792.7