Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0823 ATGGAAAATGAAGACAAAACCATAGAAGATTCAGCGACAAGGGTGTTTCCTTGCTTATTCTGCTCAAGAAAGTTTCACAGCTCGCAAGCACTAGGAGGTCACCAGAATGCCCACAAGAAGGAGAGGACAGCCGCAAGAAAGGCCAAGAGAGCTTCCGAATACACTCTAAACAGCTTCTCAGCCACCCCACCACCACCACTCGTGTTTGCTCCAAGCCACCACTTGGGCATCTTCAATCCTTCAATGTACATAACCGCCCATGCAGCGACCTTTGCTAACCATTTCCCCACCCCCCAATTCTCAGAAAGGTTCGGAGCCAGTGGTGCACCAAGGCTGGAGAATGTAGTATTTTACGGGGGAGGGAGTTGTTCGGGTAATGTGTATCAGCATCAGTTGGGAGATGATGAACAAAGCTTGGTGAATTGGCAGAGGAGTGCTCTGAGAAACAATGCCATGAATGGAGGATCATCACAGCATATTAAGAACCAAAAGCTTGGAGGTGATATTGAGAGGGATAAAGATAAAAAACTGGACTTGTCTCTCCATTTATGA 552 0.471 MENEDKTIEDSATRVFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRASEYTLNSFSATPPPPLVFAPSHHLGIFNPSMYITAHAATFANHFPTPQFSERFGASGAPRLENVVFYGGGSCSGNVYQHQLGDDEQSLVNWQRSALRNNAMNGGSSQHIKNQKLGGDIERDKDKKLDLSLHL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0823 183 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Vvi7g0823 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Vvi7g0823 183 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 183 IPR044246 GO:0009788
Vvi7g0823 183 Gene3D Classic Zinc Finger 3 62 - -
Vvi7g0823 183 MobiDBLite consensus disorder prediction 150 171 - -
Vvi7g0823 183 SUPERFAMILY beta-beta-alpha zinc fingers 14 43 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0823 Vvi-Chr7 9671071 9671622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0823 5 183 C2H2 Transcription Factor Family AT5G48890 39.560 1.04e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0823 - - vvi:100246047 352.443