Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0818 ATGGCTGTCTCTCTGAGGTGGTTCTCGCTTTGCTCGTTGTTGGTGTTGGTGCTGTTCCTCCGCGTCAACGCCGACGAGCTTCAGAAATTGAGGGTTGAAGAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGGAACTGGAAATCCCATTGATGACTGCTGGCGCTGTGACCCACATTGGCAACTTCACCGCAAGCGCCTTGCTGACTGTGGCATTGGCTTTGGACGCAATGCCATTGGTGGCCGGGATGGACGGTACTATGTGGTGACAGACCCTGGTGATTACGACGCTGTCAATCCCCGACCTGGCACTCTTCGCCATGCTGTCATCCAGGACAAGCCTTTATGGATCGTGTTCAAGCGGGACATGGTGATTAAACTGAAGCAAGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAGTGAATGTCCACATCGCCAATGGGGCGTGCATCACCATCCAGTTTATCACCAATGTCATTATCCATGGTCTCAATATTCATGATTGCAAGCCCACTGGCAACGCCATGGTCCGAAGCTCACCTAGCCATTATGGATGGAGGACAATGGCCGATGGTGATGGCATTTCAATTTTTGGCTCCAGCCACATCTGGATTGATCACAACTCCCTCTCCAACTGCGCCGATGGCCTTATTGACGCTGTGATGGGATCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAATGAGGTGATGCTATTGGGTCACAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTCGGCGAGGGACTTATCCAGAGAATGCCAAGGTGTAGGCATGGTTATTTCCATGTGGTAAACAACGACTATACCCACTGGGAAATGTATGCTATTGGTGGAAGTGCTGAGCCCACCATTAACAGCCAGGGCAACAGATATCTTGCCCCTGCCAACCCCTTTGCTAAAGAGGTGACAAAGAGGGTGATCACCTCTAACAGTGTGTGGAAGCACTGGAATTGGAGATCAGAGGGAGACCTTTTGCTAAATGGGGCCTACTTCACTCCATCCGGAGCTGGGGCTGCAGCCAGCTACGCCAGAGCTTCAAGCTTAGGAGCCAAGTCCTCTTCCATGGTGGGCACCATCACATCCGGTGCCGGTGCTCTCTCCTGCCGCAGAGGCCGCCAATGCTGA 1338 0.5149 MAVSLRWFSLCSLLVLVLFLRVNADELQKLRVEEKPDQLQSLENSTMAERLDKSEGWNERNEHAVENPEEVASMVDMSIRNSTERRNLGYFSCGTGNPIDDCWRCDPHWQLHRKRLADCGIGFGRNAIGGRDGRYYVVTDPGDYDAVNPRPGTLRHAVIQDKPLWIVFKRDMVIKLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPANPFAKEVTKRVITSNSVWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSMVGTITSGAGALSCRRGRQC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0818 445 MobiDBLite consensus disorder prediction 38 67 - -
Vvi7g0818 445 SUPERFAMILY Pectin lyase-like 73 439 IPR011050 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vvi7g0818 445 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vvi7g0818 445 SMART amb_all 171 368 IPR002022 -
Vvi7g0818 445 Pfam Pectate lyase 182 360 IPR002022 -
Vvi7g0818 445 PANTHER PECTATE LYASE 18-RELATED 64 443 IPR045032 GO:0030570
Vvi7g0818 445 FunFam Pectate lyase 96 438 - -
Vvi7g0818 445 MobiDBLite consensus disorder prediction 48 67 - -
Vvi7g0818 445 Gene3D - 96 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0818 Vvi-Chr7 9546676 9551414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0818 28 445 Polysaccharide Lyase AT4G13710 80.189 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0818 K01728 - vvi:100251082 906.36