Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0812 ATGCCGATGCCGAGGCAATACTTCAACACCCACAACCAACACCCGATGTCGAGGCAATCTTTCTGCACCCACCACCTCCACCTCCTATTCTGTAATCGTAATCTTCCCCATTTTCTCCTTCTCCTTCTACTTGCATCTTCTTGTGCTGTTTCTGCTGCAAATAATGAAGCTCTCACACTCTATTCATGGCTTCACAGCTCTCCTTCACCGCCTCTGGGTTTCTCAGACTGGAACCCTTTGGCCCCCCATCCTTGTAACTGGTCTTACATCACTTGTTCTTCAGAAAACTTCGTTACAGAAATAAATGTCCAGTCTCTTCATTTAGCTCTTCCCTTCCCTTCCAATCTTTCCTCCCTTGTTTTTCTTAAGAAGTTCACTGTTTCGGATGCTAACCTGACCGGAACGATCCCCGCTGATATTGGAGACTGCACTGAGCTTACAGTACTGGACGTTGGTTCAAACAGTCTCGTGGGTAGCATTCCATCTAGTATTGGGAAGCTCCATTATCTTGAAGATCTCATTTTAAACTCTAACCAGATTACTGGGAAGATCCCGGCAGAGCTTGGTGACTGCACCGGCCTTAAGAGTCTTCTTCTATATGATAATCAATTAAGTGGTGATATTCCGGTTGAGCTTGGAAAACTGTTGAGTCTAGAAGTTATACGGGCAGGAGGGAACAGAGACATCTCAGGGATAATCCCGGATGAGCTTGGAAATTGTCAGAATTTGAAGGTGCTTGGTCTTGCTTATACTAAAATTTCTGGCTCCATACCTGTTTCATTGGGTAAGCTAAGCAAGCTTCAGACGCTATCAGTGTACACTACAATGCTATCTGGTGAGATACCGCAGGAATTAGGGAACTGTTCTGAGCTTGTGGATTTATTTCTCTATGAGAACAGTCTCTCGGGTTCACTCCCCCTGCAGCTTGGCAAGCTTCAAAAGCTGGAGAAGATGTTACTGTGGCAGAACAACCTTGATGGGACTATTCCTGAGGAGATTGGGAACTGCGGAAGCTTGAGGACTCTTGATCTCTCCTTGAATTCTTTCTCTGGGAGTATACCTTTGTCTTTTGGGACCCTCACAATGCTTGAAGAGCTTATGCTTAGTAACAATAATCTCTCTGGCTCAATCCCATCAGGTCTTTCCAATGCCACCAACCTCCTGCAGTTACAAGTTGATACTAACCAGATATCAGGTCCAATCCCACAAGAACTTGGGATGCTGAGGGATCTCACTGTCTTCTTTGGCTGGGATAACAAATTTGAAGGAAGCATTCCTTCTGCATTGGCTGGTTGCAGAAGCCTCCAGGCTTTAGATTTGTCACACAATTCTCTGACTGGTAGCTTGCCTCCTGGCCTATTTCAACTTCAAAATTTGACAAAGCTTCTCTTAATTTCTAATGACATTTCTGGTTCGATTCCTGTGGAGATTGGAAATTGCAGCTCCCTTGTTCGCCTCCGTCTTCAAGACAATAAAATCACCGGAGAGATTCCCAAAGAAGTTGGGTTCCTCACTAACCTCAGTTTCCTCGACCTGTCTCAAAACCGTCTTTCTGGAAGGGTGCCAGATGAGATTGGCAATTGTACTGACTTACAGATGGTGGACTTAAGCAACAACAGCTTTGTAGGCACTTTGCCCGGTTCTCTTTCTTCTCTCACCAGGCTCCAGGTCTTGGATGTTTCCATGAACCAGTTTGAGGGTGAGATTCCTGGGAGTTTTGGTCAACTTACAGCACTTAATAGGCTTGTCCTCCGTAGGAACTCCCTCTCCGGTTCTATCCCTTCATCGCTTGGCCAATGCTCAAGTCTTCAGTTGCTCGATCTTAGCAGTAACGCACTCTCCGGCGGCATTCCTAAGGAACTTTTCGGGATTGAGGCTCTTGACATTGCTCTTAACTTGAGTTGGAATGCCCTCACTGGGGTAATCTCACCCCAGATTTCTGCTCTCAGCAGGCTATCAATACTAGATCTTTCACACAATAAGATTGGTGGAGATTTGATGGCACTTTCTGGGCTGGAAAACCTTGTTTCTCTAAACATCTCTTATAACAATTTCAGTGGCTATCTTCCTGACAACAAGCTGTTCCGGCAGTTATCAGCAACAGACCTGGCTGGAAACAAAGGACTCTGTTCTTCGAATCGTGATTCATGTTTCGTAAGAAATCCTGCAGATGTGGGACTGCCAAACAGCAGCCGTTTTAGGCGGTCACAGAGACTTAAATTGGCAATTGCATTGCTAGTTGCCCTCACTGTTGCAATGGCAATTCTTGGGATGCTTGCAGTTTTTAGAGCTCGGAAAATGGTCGGAGATGATAATGATTCGGAGTTGGGAGGGGATTCCTGGCCTTGGCAGTTCACTCCATTCCAGAAGCTGAATTTCTCAGTGGAGCAAGTTCTAAGATGTCTAGTAGAAGCCAATGTTATTGGAAAAGGATGCTCAGGGGTTGTCTACCGTGCAGAAATGGAAAATGGGGAAGTCATTGCAGTGAAGAAGCTCTGGCCAACAACACTGGCTGCAGGGTATAACTGTCAAGATGACAGATTGGGAGTTAATAAAGGTGTTCGTGATTCCTTCTCAACTGAGGTGAAAACCCTTGGCTCCATTCGCCACAAGAACATTGTTAGGTTCTTGGGTTGCTGTTGGAATCAAAGCACAAGACTCCTCATGTATGACTTCATGCCAAACGGAAGCTTGGGCAGTCTCCTTCATGAACGGAGCCGTTGCTGCTTGGAATGGGACTTGAGGTACCGAATTGTGTTGGGATCGGCTCAGGGCCTATCTTATTTACACCATGACTGTGTTCCTCCCATTGTTCACAGGGACATCAAGGCCAACAACATTCTCATTGGCTTTGATTTTGAGCCCTACATTGCTGATTTTGGGCTTGCCAAGCTGGTTGATGATAGGGATTATGCTCGGTCTTCCAATACTATTGCTGGTTCCTATGGTTACATTGCTCCAGAGTATGGATATATGATGAAGATCACAGAGAAGAGCGATGTTTATAGCTATGGAGTTGTTGTGTTAGAAGTGTTAACAGGGAAGCAACCAATTGATCCAACAATTCCAGATGGGCTTCACATTGTAGACTGGGTAAGGCAGAGGAAAGGTCAAATTGAGGTACTTGATCCCAGCTTACACTCTAGGCCAGAATCCGAGCTCGAGGAGATGATGCAGACCTTGGGTGTGGCTCTACTCTGTGTGAATCCTACTCCAGATGACAGGCCGTCGATGAAAGATGTGGCTGCAATGCTGAAGGAGATTAGGCATGAGAGAGAAGAGTCTATGAAAGTTGACATGCTTCTCAAGGGATCTCCAGAAAATGGTAGACATGAAGTTAATAATTCTGGTGGAGGCCCATCGGAAATGATGCAATGCTCATACCCCCAAAGCAATAATACAAGTTTTTCTGCATCCTCACTGCTATACTCTTCTTCCTGCAATGCGAAAATGCCTTTCAAATAG 3465 0.4551 MPMPRQYFNTHNQHPMSRQSFCTHHLHLLFCNRNLPHFLLLLLLASSCAVSAANNEALTLYSWLHSSPSPPLGFSDWNPLAPHPCNWSYITCSSENFVTEINVQSLHLALPFPSNLSSLVFLKKFTVSDANLTGTIPADIGDCTELTVLDVGSNSLVGSIPSSIGKLHYLEDLILNSNQITGKIPAELGDCTGLKSLLLYDNQLSGDIPVELGKLLSLEVIRAGGNRDISGIIPDELGNCQNLKVLGLAYTKISGSIPVSLGKLSKLQTLSVYTTMLSGEIPQELGNCSELVDLFLYENSLSGSLPLQLGKLQKLEKMLLWQNNLDGTIPEEIGNCGSLRTLDLSLNSFSGSIPLSFGTLTMLEELMLSNNNLSGSIPSGLSNATNLLQLQVDTNQISGPIPQELGMLRDLTVFFGWDNKFEGSIPSALAGCRSLQALDLSHNSLTGSLPPGLFQLQNLTKLLLISNDISGSIPVEIGNCSSLVRLRLQDNKITGEIPKEVGFLTNLSFLDLSQNRLSGRVPDEIGNCTDLQMVDLSNNSFVGTLPGSLSSLTRLQVLDVSMNQFEGEIPGSFGQLTALNRLVLRRNSLSGSIPSSLGQCSSLQLLDLSSNALSGGIPKELFGIEALDIALNLSWNALTGVISPQISALSRLSILDLSHNKIGGDLMALSGLENLVSLNISYNNFSGYLPDNKLFRQLSATDLAGNKGLCSSNRDSCFVRNPADVGLPNSSRFRRSQRLKLAIALLVALTVAMAILGMLAVFRARKMVGDDNDSELGGDSWPWQFTPFQKLNFSVEQVLRCLVEANVIGKGCSGVVYRAEMENGEVIAVKKLWPTTLAAGYNCQDDRLGVNKGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNQSTRLLMYDFMPNGSLGSLLHERSRCCLEWDLRYRIVLGSAQGLSYLHHDCVPPIVHRDIKANNILIGFDFEPYIADFGLAKLVDDRDYARSSNTIAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHIVDWVRQRKGQIEVLDPSLHSRPESELEEMMQTLGVALLCVNPTPDDRPSMKDVAAMLKEIRHEREESMKVDMLLKGSPENGRHEVNNSGGGPSEMMQCSYPQSNNTSFSASSLLYSSSCNAKMPFK* 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0812 1154 ProSiteProfiles Leucine-rich repeat profile. 434 456 IPR001611 GO:0005515
Vvi7g0812 1154 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 785 892 - -
Vvi7g0812 1154 SMART LRR_typ_2 432 456 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 672 697 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 167 191 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 576 600 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 360 384 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 312 336 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 601 624 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 552 575 IPR003591 -
Vvi7g0812 1154 SMART LRR_typ_2 504 528 IPR003591 -
Vvi7g0812 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Vvi7g0812 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 308 416 - -
Vvi7g0812 1154 FunFam Predicted protein 209 307 - -
Vvi7g0812 1154 Gene3D Phosphorylase Kinase; domain 1 787 892 - -
Vvi7g0812 1154 ProSiteProfiles Leucine-rich repeat profile. 651 673 IPR001611 GO:0005515
Vvi7g0812 1154 PRINTS Leucine-rich repeat signature 435 448 - -
Vvi7g0812 1154 PRINTS Leucine-rich repeat signature 504 517 - -
Vvi7g0812 1154 MobiDBLite consensus disorder prediction 1104 1124 - -
Vvi7g0812 1154 SUPERFAMILY L domain-like 64 421 - -
Vvi7g0812 1154 Pfam Leucine Rich repeat 432 447 IPR001611 GO:0005515
Vvi7g0812 1154 Pfam Leucine Rich repeat 651 664 IPR001611 GO:0005515
Vvi7g0812 1154 PANTHER UNNAMED PRODUCT 382 1019 - -
Vvi7g0812 1154 Gene3D Transferase(Phosphotransferase) domain 1 893 1105 - -
Vvi7g0812 1154 SUPERFAMILY Protein kinase-like (PK-like) 786 1085 IPR011009 -
Vvi7g0812 1154 SMART LRR_sd22_2 504 527 - -
Vvi7g0812 1154 SMART LRR_sd22_2 649 674 - -
Vvi7g0812 1154 SMART LRR_sd22_2 360 383 - -
Vvi7g0812 1154 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Vvi7g0812 1154 Gene3D Ribonuclease Inhibitor 417 721 IPR032675 -
Vvi7g0812 1154 Pfam Protein tyrosine and serine/threonine kinase 806 1084 IPR001245 GO:0004672|GO:0006468
Vvi7g0812 1154 SUPERFAMILY RNI-like 320 685 - -
Vvi7g0812 1154 ProSiteProfiles Protein kinase domain profile. 802 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0812 1154 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Vvi7g0812 1154 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515
Vvi7g0812 1154 MobiDBLite consensus disorder prediction 1109 1124 - -
Vvi7g0812 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 434 721 - -
Vvi7g0812 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 893 1103 - -
Vvi7g0812 1154 SMART serkin_6 802 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g0812 1154 Gene3D Ribonuclease Inhibitor 215 414 IPR032675 -
Vvi7g0812 1154 Gene3D Ribonuclease Inhibitor 52 211 IPR032675 -
Vvi7g0812 1154 FunFam Nuclear pore complex protein NUP107 52 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0812 Vvi-Chr7 9482476 9486270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0812 52 1139 Receptor kinase-like Gene Family AT5G56040 46.279 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi7g0812 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0812 - - vvi:100854320 2214.11