Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0811 ATGAAGGGAATTGAAGTGGACGACGGAGGAGATCTGCATGCAAATGATGGAGTTGGGTTGGGAGATACGGGGGGTTGTGCTGGTGGCACAGACACAACTGGGTTCGATGCTATGGAGGACGAGGCAATGGGTGTTGGTGACGGGGAGATCTGGCTTGATAGGGACCCTGATGATCTCCTCGATGTACACGACAATTCCATCTTCTATGGTGATTTTCCTCCTCTTCCTGATTTTCCTTGCATGTCTTCGTCGTCGTCTTCTTCATCTGCTCCTGCACCAGTCAAGTCCATCGCTTGCTCTTCCTCTTCTTCATCCGCTAGTTCTTCATCGGCGGCTTCTTGGGCGGTTCTCAAATCTGATGCGGAGGTGGACGAGGACAAGAAGAACCACCGCGACCATCACGATCCGGTGGAAGTGCCACCTGCTGCGCTGTCATCCACTGCCTCCATGGAGATCCCTCAGGAGGCGCCTGATCAAGGTTTGGAAGATGTTGATTGCATAAATGTGATGGAGAATTTCGGGTACATGGATCTGCTGGAACCAAATGATATCTGGGACCCGTCTTCTCTATTTCATATGGACGATTCGCATGACTTTGAAGCTGAGCAGCAGCCTCAACAGGAACAGGAACAGCCAAAGCCACAGCCGGAACTTCCACCGCAGCAGCAAGATGAAGAGTTTATGGTGCAGAGAAATGATGAAGAGGGTCAGAGGCCTTCGGAGGATCTAGCCATGGTGTTCTTCGAGTGGCTCAAGTCCAACAAAGAGTCAATTTCTCCCGAAGACTTGAGGAACATCAAACTGAAGCGGGCCACCATCGAGTGTGCCGCTAAGCGCTTGGGCGGTGGAAAAGAGGGCATGAAGCAGCTGCTCAAACTCATCCTTGAGTGGGTGCAAAATCACCAACTCCAGAAGAAGCGAATCAGCGAAACACAAATCTCTCATTTCCCTTACAATTATCAAGACCCCTACGCAACCCAAAGCCCTAACCCTAACCCTAGCCCTATCCCCAACATCAACTGCAATCCTATTCCTCCTGATCCAAACCCTTGTTTCCCTTCCCCTCATTGGCTTCCACAATCACCGTACATGACCGATCCGTCGCCGGTGATGGCGCCGCCACCTTTTCCTCCGATGGTTGGGTATATGGGTGACCCTTTTGCTAATGGGCCTTCGAATATCAATAGCCATCCTTATCAGTCCACATCGGAATATCACATTCTGGACTCTACCAACACATGGCAGCCCTCTCAATTTTCTTTGCCTTCTCCTTACACCTCATTTCCAGAGAGTAATCTTCCTCTTGCTCCTGCTCCTCAGCCTCCGCAGGCTTTTGCAGGTTATGGGAACCAATTCACCTATCAGTATTTTCCGGGGAATGGTGAGAGGTTGACGAGGCTTGGTTCTTCAGCAACTAAGGAAGCTAGGAAGAAGAGGATGGCTAGGCAGAGGCGGGTTTTCTCGCACCATCATCGCCATCATAATCACCATAACCAACAGCAACAAAATCCAAGCCCTGACCAGCAAGCAAGGCCTGCCGGCAATGAAGGTTGCAACAGTGCAGCTCAAGCCAACCAAGCCAACTGGGTTTTCTGGCCCTCTGCTGGTGCTGCTTCAAACTCGCCGGCGGGAGCACCGGATGCGCCACAACCACAACCACCGCCGCCACCACCACCAGCAGTGGATCGGCAAGCTGGACAAGCCCAAAACAACCCGCGGCAGCTTGCAGCTGAGAGGCGGCAGGGATGGAAACCTGAGAAGAACTTGAAGTTTCTTCTACAGAAAGTACTGAAGCAAAGCGATGTGGGTAATCTTGGAAGAATTGTGTTGCCAAAAAAAGAGGCAGAGACGCACCTCCCAGAACTGGAAGCGAGAGATGGGATTACCATCCCCATGGAGGACATTGGAACTTCTCGCGTCTGGAACATGCGGTATAGATTCTGGCCAAATAACAAAAGCAGGATGTATCTCCTCGAGAACACCGGAGATTTTGTGAGATCAAATGGACTGCAGGAAGGTGATTTCATAGTGTTATACTCAGACGTCAAGTGTGGAAAATACATGATTCGAGGTGTGAAAGTGAGACAATCTGGTCCGAAATCTGAGAGCAAGAGGTCGGGAAAATCACAGAGAAACCAACAAACAGCTTCCCCAGCTGGTAATGGTTCCACTCCTTCACTCAGCAAACGAACAACCAAGTGA 2202 0.5077 MKGIEVDDGGDLHANDGVGLGDTGGCAGGTDTTGFDAMEDEAMGVGDGEIWLDRDPDDLLDVHDNSIFYGDFPPLPDFPCMSSSSSSSSAPAPVKSIACSSSSSSASSSSAASWAVLKSDAEVDEDKKNHRDHHDPVEVPPAALSSTASMEIPQEAPDQGLEDVDCINVMENFGYMDLLEPNDIWDPSSLFHMDDSHDFEAEQQPQQEQEQPKPQPELPPQQQDEEFMVQRNDEEGQRPSEDLAMVFFEWLKSNKESISPEDLRNIKLKRATIECAAKRLGGGKEGMKQLLKLILEWVQNHQLQKKRISETQISHFPYNYQDPYATQSPNPNPSPIPNINCNPIPPDPNPCFPSPHWLPQSPYMTDPSPVMAPPPFPPMVGYMGDPFANGPSNINSHPYQSTSEYHILDSTNTWQPSQFSLPSPYTSFPESNLPLAPAPQPPQAFAGYGNQFTYQYFPGNGERLTRLGSSATKEARKKRMARQRRVFSHHHRHHNHHNQQQQNPSPDQQARPAGNEGCNSAAQANQANWVFWPSAGAASNSPAGAPDAPQPQPPPPPPPAVDRQAGQAQNNPRQLAAERRQGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGITIPMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVLYSDVKCGKYMIRGVKVRQSGPKSESKRSGKSQRNQQTASPAGNGSTPSLSKRTTK* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0811 733 MobiDBLite consensus disorder prediction 122 141 - -
Vvi7g0811 733 SUPERFAMILY DNA-binding pseudobarrel domain 592 688 IPR015300 -
Vvi7g0811 733 Gene3D - 589 709 IPR015300 -
Vvi7g0811 733 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 221 709 IPR044800 GO:0003700
Vvi7g0811 733 MobiDBLite consensus disorder prediction 694 733 - -
Vvi7g0811 733 ProSiteProfiles B3 DNA-binding domain profile. 593 695 IPR003340 GO:0003677
Vvi7g0811 733 MobiDBLite consensus disorder prediction 122 138 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 468 521 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 708 733 - -
Vvi7g0811 733 Pfam B3 DNA binding domain 594 690 IPR003340 GO:0003677
Vvi7g0811 733 MobiDBLite consensus disorder prediction 499 521 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 477 498 - -
Vvi7g0811 733 SMART B3_2 593 695 IPR003340 GO:0003677
Vvi7g0811 733 MobiDBLite consensus disorder prediction 546 562 - -
Vvi7g0811 733 FunFam B3 domain-containing transcription factor FUS3 589 704 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 81 111 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 199 222 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 534 583 - -
Vvi7g0811 733 CDD BfiI_C_EcoRII_N_B3 591 692 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 1 25 - -
Vvi7g0811 733 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0811 Vvi-Chr7 9431080 9433884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0811 1 733 B3 DNA Binding Superfamily AT3G24650 46.125 5.55e-171 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi7g0811 B3 6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0811 - - vvi:100854233 1266.52