Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0787 ATGAATCACTGCGTACCTGATTTTGAGGTAGATGATGAGGACGCGATTCCCTTGACCAGACCGAAGAAATCAGCGGCCATGGTTGAGGATGATGAAATCATGGAGCTGCTCTGGCAGAATGGTCAGGTGGTGATGCAGATCCAGAATCAGCGATCTTTCAAGAAATCCCAGCCTTCGAAATTTCCAATTCAAGATGCTGTGCTTCCGCCGGAGCAGTCCAAGATCCGGTCATCGGCTCCGGTGGATGAGTCCAGCGCTCAGCTCTTCATGCAGGAAGATGAGATGGCTTCGTGGCTTCACTACCCGCTCGACGATTTCTGTGCTGATCTCCTCGATCCTACGCCGTGTGTTAATGCCTCTCCCCCTCCGGCGCGGCCTAATTTGTCGCCGGATGTCCGTCAGCCTGAGGAGAGGCCTGCTGCGACGAAGCCGCCGATTCCGCCGGCGAGGAGGGTGGAGCTGGACTCCAAGGTTCACAACTTCCTGCATTTCCCGAGGAAATCGACTGCCGAATCTGGAGAGCCTAGCTCAAGCAGGCCGGCGGGGATGGAATCGACGGTGGTGGACTCAAGCGATACGCCGGGGGTATGCCAGCAGTCCAGGACTTCCCCAGCCGAGTGGTGCAAGGCGGAGTTAGCGAATTCCGGGTACGGGACTATTGGCGGTGCTACTGAGGCCGCGACGTCAGCAGCCGGGGAACATACAACATTTGAGCTCACGATGACGTCATCTCCTGAAGGGTCCGGGTCTGGCGGCAGCGCCAGCGCCGGAGCCGAACCGACTCCGAAAGCGCCGGCGGACGATCGAAAACGGAAGGGAAGAGAAGGCGACGACACGGCCGAGTACCAGAGCGAGGACGTTGAGTTTGAATCTGCTGATGCAAAGAAACAAGTCCGTGGATCAGCGACTGCAAAGAGATCCCGTGCTGCGGAGGTTCACAACCTGTCTGAGAGGAGACGTCGAGACAGGATAAATGAAAAGATGAAGGCTTTGCAAGAACTAATACCTCGTTGCAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCAATTGAGTACTTGAAATCACTTCAGTTGCAAGTTCAGATGATGTCGATGGGATGCAGCATGGTCCCTATGATGTATCCTGGCGTCCAGCAGTACATGCCACAAATGGGGATGGGAATGGGCATGGGCATGGGCATGGAGATGGGTATGAACCGTCCAATGATGCCATTTCCCTCTGTTTTAGGTGGCTCAACCTTGCCCACAACAGCTGCAGCAGCTCATTTGGGTCAAAGATATCCTATGCCAGCCTTTCATATGCCCCACATGGCTGCACCTGATTCATCTAGGATCCAAGCAAACAACCAGTCGGATCCGGTTCTGAACTCACTTGGCACACAAAGTTCCAACCAGCCACGGGTTCCCAATTTCGCAGATCCATATCTGCAGTACCTCCAGCAGATGCAAATGCCACCAGCTCAGAATCAAGCAATGGGCCAGCAAAATACGAGCAAGCCAAGTACCAGCAAAGGAACTGAGAATCTCGAAAATCACCGATCAGGTTGA 1551 0.5422 MNHCVPDFEVDDEDAIPLTRPKKSAAMVEDDEIMELLWQNGQVVMQIQNQRSFKKSQPSKFPIQDAVLPPEQSKIRSSAPVDESSAQLFMQEDEMASWLHYPLDDFCADLLDPTPCVNASPPPARPNLSPDVRQPEERPAATKPPIPPARRVELDSKVHNFLHFPRKSTAESGEPSSSRPAGMESTVVDSSDTPGVCQQSRTSPAEWCKAELANSGYGTIGGATEAATSAAGEHTTFELTMTSSPEGSGSGGSASAGAEPTPKAPADDRKRKGREGDDTAEYQSEDVEFESADAKKQVRGSATAKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCSMVPMMYPGVQQYMPQMGMGMGMGMGMEMGMNRPMMPFPSVLGGSTLPTTAAAAHLGQRYPMPAFHMPHMAAPDSSRIQANNQSDPVLNSLGTQSSNQPRVPNFADPYLQYLQQMQMPPAQNQAMGQQNTSKPSTSKGTENLENHRSG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0787 516 CDD bHLH_AtPIF_like 308 371 IPR047265 -
Vvi7g0787 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Vvi7g0787 516 MobiDBLite consensus disorder prediction 150 164 - -
Vvi7g0787 516 MobiDBLite consensus disorder prediction 240 255 - -
Vvi7g0787 516 Coils Coil 314 334 - -
Vvi7g0787 516 MobiDBLite consensus disorder prediction 263 280 - -
Vvi7g0787 516 MobiDBLite consensus disorder prediction 443 516 - -
Vvi7g0787 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 387 IPR036638 GO:0046983
Vvi7g0787 516 SMART finulus 314 363 IPR011598 GO:0046983
Vvi7g0787 516 MobiDBLite consensus disorder prediction 240 317 - -
Vvi7g0787 516 MobiDBLite consensus disorder prediction 482 510 - -
Vvi7g0787 516 PANTHER TRANSCRIPTION FACTOR PIF3 21 240 IPR044273 GO:0003700|GO:0006355
Vvi7g0787 516 MobiDBLite consensus disorder prediction 443 471 - -
Vvi7g0787 516 MobiDBLite consensus disorder prediction 170 205 - -
Vvi7g0787 516 FunFam Basic helix-loop-helix transcription factor 303 366 - -
Vvi7g0787 516 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Vvi7g0787 516 Gene3D - 303 366 IPR036638 GO:0046983
Vvi7g0787 516 MobiDBLite consensus disorder prediction 118 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0787 Vvi-Chr7 9033294 9037711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0787 1 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.495 5.96e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi7g0787 HLH 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0787 - - vvi:100264869 956.436