Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0783 ATGAAGCTACTCAATGGGATCAATAGCAATAAGAAATCATGTCAACAAGGAAATGGTGATTTGATTTCGGATGAAAAGCTTACTGCTCTTGTGGTAGATAGCGATATAATTTGTCAAGTATTGGAAAAAGCAATTTTAGAATCTCAAGGCATTCAAGCCCAGGTTGTGGGGAGTGGGAGAGATGCTATAGATCTCTTAGCCTCTGGGGTGAATTTTGATCTCATTATCATAGCTATGGTGCTCCCGATCATGAACGGGGTTGAGACCACTAGGCAAATTCGAGCAATGGGCATTCGTAGCAAAATGTTGGGCGTTACTGCTTGCTCATATGAAAGGGAGAGACGAGCGTTTTTGGATGCTGGTGTGGATGAGTTTATTGAGAAGCCGCTTACTCCTCAAAAGTTGGCATCTGTTTTGAGAGAGATCAGAAATGCTTGA 438 0.4224 MKLLNGINSNKKSCQQGNGDLISDEKLTALVVDSDIICQVLEKAILESQGIQAQVVGSGRDAIDLLASGVNFDLIIIAMVLPIMNGVETTRQIRAMGIRSKMLGVTACSYERERRAFLDAGVDEFIEKPLTPQKLASVLREIRNA* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0783 145 Pfam Response regulator receiver domain 30 139 IPR001789 GO:0000160
Vvi7g0783 145 SUPERFAMILY CheY-like 26 143 IPR011006 -
Vvi7g0783 145 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 144 - -
Vvi7g0783 145 ProSiteProfiles Response regulatory domain profile. 28 143 IPR001789 GO:0000160
Vvi7g0783 145 CDD REC_hyHK_CKI1_RcsC-like 30 139 - -
Vvi7g0783 145 SMART REC_2 27 139 IPR001789 GO:0000160
Vvi7g0783 145 Gene3D - 28 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0783 Vvi-Chr7 8424354 8424874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0783 27 145 Response Regulator Gene Family AT3G04280 33.884 1.25e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi7g0783 Response_reg 4.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0783 - - vvi:100249785 278.485