Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0767 ATGGCCATGGCTCTTGTCGTCGGAGCTTTAGGTCAAATTGGAGGCCACCTCGATGCATGGGGCGACGGACGTGCAACATTTTATGGTGATATTCATGGGAGTGAAACCATGTATGGAGCATGTGGCTATGGAAATTTATTTGAACAAGGGTATGGTCTCGAGACAACTGCGCTAAGCACAGCGCTGTTCAACAACGGGGCGACATGTGGAGCCTGTTTTGAGCTATATTGTGTGCACTCAAAATGGTGCATAAAGGGGGCCGGAGGCATTCGAGTGACAGCAACAAATTTTTGCCCGCCTAGCTCTACATCCCCAAACCCCTGGTGCAATCCACCACAAAAGCACTTCGATTTGTCGCAATACATGTTTCTAAAGTTCGCCATATACCAAGGCGGAGTCGTGCCCGTGAAGTTCCGGAGGGTGTATTGTTACAAGAAGGGAGGAATGAAGTTCGAGATCAAAGGAAACCCATATTGGATTCTTGTGTTGGTGTACAATGTGGGAGGTCTGGGGGATGTTTCTAATGTGAAGGTCAAGGGTTCAAGGACTGACTGGATACAGATGCAACGGAATTGGGGCCAGAATTGGGAAACGGGGGTTCAATTGGTAGGCCAAGGCCTATCTTTTCAGGTGACTACTAGTGATGGTAGGATGGTGCAGTCGGATAATATTGTCCCAACCAATTGGGAGTTTGGTCAAACATTTGAGGGGCGAAATTTTTGA 723 0.4799 MAMALVVGALGQIGGHLDAWGDGRATFYGDIHGSETMYGACGYGNLFEQGYGLETTALSTALFNNGATCGACFELYCVHSKWCIKGAGGIRVTATNFCPPSSTSPNPWCNPPQKHFDLSQYMFLKFAIYQGGVVPVKFRRVYCYKKGGMKFEIKGNPYWILVLVYNVGGLGDVSNVKVKGSRTDWIQMQRNWGQNWETGVQLVGQGLSFQVTTSDGRMVQSDNIVPTNWEFGQTFEGRNF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0767 240 SUPERFAMILY Barwin-like endoglucanases 19 166 IPR036908 -
Vvi7g0767 240 Gene3D - 147 240 IPR036749 -
Vvi7g0767 240 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 76 87 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Vvi7g0767 240 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Vvi7g0767 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Vvi7g0767 240 PANTHER EXPANSIN-A15 14 240 IPR002963 GO:0009664
Vvi7g0767 240 Pfam Expansin C-terminal domain 150 226 IPR007117 -
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 19 34 IPR007118 GO:0005576
Vvi7g0767 240 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Vvi7g0767 240 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
Vvi7g0767 240 Gene3D - 12 143 IPR036908 -
Vvi7g0767 240 SMART dpbb_1 55 138 IPR007112 -
Vvi7g0767 240 Pfam Lytic transglycolase 55 138 IPR009009 -
Vvi7g0767 240 CDD DPBB_EXPA_N 20 143 - -
Vvi7g0767 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 148 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0767 Vvi-Chr7 8110218 8111014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0767 1 238 Expansin Gene Family AT5G39300 61.826 2.64e-107 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0767 - - vvi:100246415 518.464