Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0706 ATGGCAAGGAATCCAAGAGTTTTGGCAGCCTATCGTGCAATGAGGGCCCTGGGCATTGCTGAGGCAACTGTGAAACCAGTCCTGAAGAATCTATTAAGATTATATGAGAAAAACTGGGAACTAATTGAAGAAGAGAATTATAGAGCCCTTGCTGATGCTATATTTGAGTATGAGGAAACTAAGGTGGATGAACAGAAGAAGCAATCTGAGATAGCTGATCAAGATAACATTTTGGGGGGAGAGACTCAGTTGCATGATGAGCCTGCTCGTCCCTTAAAAAGGTTGCGCTTAAGAAACCAAGAAAGTCAGGTTTCACCTTCTCTCGCAAATTCCAGCCAGACACTAGGTGGAGCTGTAATGAAAAGGCCTAAATTGGAGGATGCTGAACAACCTCAAACTCTTGCTGAAAGGCAACCACAGGGTATAGCAGAGACACCTGAGCCCAGTGTTGGAAACATAAGACCTGAACTGCATCCTGTTTCATCACCACAGGCACATCTTGTAAACAAAGGAAAGCAACCTGCTTTGCCCCAACCCTTGGCAGTGCAGGGAAGATCTGATTTATCTCCAACATCTGCTACAAAGAGGGCTGAATCTGATCTTCTTCATACTCAGCAACGCCTCAGAGACAAGGGAAAAGAGCCCCTGTCACCCCAAATTGCTGCAAAGGAGAAAAGATCAATTCCTGTCAGATCATTCCACCTGAATGCTGAGCCTGGCATTATTCTTTCGCCAAAACAGAAGGTGCATGATACTCCTGCCTTAATGAAGCCTAAAGATGAGCCATTTACTGATGACATACTGCAGCTTGAGGTTCCTATTGCTGTGATCCATCCAGATCCATTACATAAAGGAAATTTACCTGAAAATTATTCTACCGGAAAACTAGATGGCCCACAACCCCCTGTAAACAGTCGTGTAGATGGAGAAGATGAAGTTAATGGTGGTCCAGCTTCGTCAAGCGGAGCAGGGACCAATTGTGAGCTTGCAAACATCTCAAATCTAGAGATTGCTTCCTCTCCCTTGGGAGAGGTGAAGATTTCGCTGAGTTGCAACTCTGCTCTTGGAAAACCTGATTTCCGTATGCCAAGTCTTGATACACTTTTAAAGTTGGTAGAAGATAAATGTCTAAGATCGTATAAAATTATTGATCCAAATTTTTCTGTGACGAAACTGATGAGAGATATGTGCGACTGCTTTTTGGAACTAGGAACTCACACTGAAGAATCACATGAAGGATCAATAAATACGACACCAACTGGTGATTTGTTGGGAAAATCTACTGCACCAGATGCTGTAGGTTCCTGTGGGGATGAGGAAAATTTTAGCATGTCATCTTGTATAACGAATGGATCATTCAAGATTCAATGCTCAACTGAGGTGGCTGTGCCTCAGATTCCAAGATTACTTTCATCATCTTTGAATGGCCTGGGTGATCACATACAGCTCGATAGCAAAATTACTGAGAACAGTTGTAGAGAAAATGGCCAGGAAAAGGAAACAAATGGTCCCAATAATGCAAATTCACTTAGTCTGGTGGTGGTTCAACAGCGTCAATTAACTCCTGATGATATAAGGTTTATCCATGATGTTGATGACATAACAAAAGGAGAAGAAAAGGTCAGAATTCCATTGGTTAATGAAACCAACAGTGAGTTCCCAACACCCTTTCACTACATATCCCAAAACCTAGTTTTTCAAAATGCCTACATGAATTTGTCTCTTGCTCGGATTGGGATTGAAAATTGTTGTTCAACTTGTTTTGGTGATTGTCTATCTTCTTCAACACCTTGTGCCTGTGCATGTGAAAGTGGGGGTGATTTTGCATATACATTAGAAGGACTAGTTAAGGAAGACTTTTTAGAAGAGTGCATTTCAAGGAATCGTGACCCTCAACAGCACCAGCTTGCTTTTTGTCAAGAATGCCCTCTTGAAAGATCCAAGGCTGAAGATATTTTAGAACCATGCAAGGGTCACATTGTGAGGAAATTCATCAAAGAGTGTTGGAGCAAATGTGGCTGCTCCAAACAGTGCAGAAATCGTCTGGTGCAGAGAGGCATAACTTGCAATTTTCAGGTGTTTTTGACTCCTGATGGAAAAGGGTGGGGTCTTCGGACCCTAGAGGATTTACCAAAAGGTTCTTTTGTGTGTGAGTATGTTGGGGAAATATTGACTACAGTGGAGCTGTATGAACGAAACATGCAAAGTACCAGCAGAGGCAAACAAACATACCCAGTGCTCTTAGATGCTGATTGGGCTTTGAGAGGAATCTTGAAGGATGAAGAAGCTCTCTGTCTAGATGCAACATTTTATGGAAATGTTGCAAGGTTTATCAATCACAGGTGTTTAGATGCAAACTTAGTTGAGATACCAGTTGAAGTGGAATCCCCAGATCATCACTACTATCATCTTGCACTTTTCACAACAAGAAAAGTAAATGCTTTGGAAGAGCTGACTTGGGATTATGGCATTGACTTTGATGACCAGGATCATCCAGTTAAGACATTCAGATGCTGTTGTGGTAGCAAGTTCTGCCGTAATATGAAGCGCACAAGGTCTAGGTCTGCATTAAGTTTGGGATGA 2583 0.422 MARNPRVLAAYRAMRALGIAEATVKPVLKNLLRLYEKNWELIEEENYRALADAIFEYEETKVDEQKKQSEIADQDNILGGETQLHDEPARPLKRLRLRNQESQVSPSLANSSQTLGGAVMKRPKLEDAEQPQTLAERQPQGIAETPEPSVGNIRPELHPVSSPQAHLVNKGKQPALPQPLAVQGRSDLSPTSATKRAESDLLHTQQRLRDKGKEPLSPQIAAKEKRSIPVRSFHLNAEPGIILSPKQKVHDTPALMKPKDEPFTDDILQLEVPIAVIHPDPLHKGNLPENYSTGKLDGPQPPVNSRVDGEDEVNGGPASSSGAGTNCELANISNLEIASSPLGEVKISLSCNSALGKPDFRMPSLDTLLKLVEDKCLRSYKIIDPNFSVTKLMRDMCDCFLELGTHTEESHEGSINTTPTGDLLGKSTAPDAVGSCGDEENFSMSSCITNGSFKIQCSTEVAVPQIPRLLSSSLNGLGDHIQLDSKITENSCRENGQEKETNGPNNANSLSLVVVQQRQLTPDDIRFIHDVDDITKGEEKVRIPLVNETNSEFPTPFHYISQNLVFQNAYMNLSLARIGIENCCSTCFGDCLSSSTPCACACESGGDFAYTLEGLVKEDFLEECISRNRDPQQHQLAFCQECPLERSKAEDILEPCKGHIVRKFIKECWSKCGCSKQCRNRLVQRGITCNFQVFLTPDGKGWGLRTLEDLPKGSFVCEYVGEILTTVELYERNMQSTSRGKQTYPVLLDADWALRGILKDEEALCLDATFYGNVARFINHRCLDANLVEIPVEVESPDHHYYHLALFTTRKVNALEELTWDYGIDFDDQDHPVKTFRCCCGSKFCRNMKRTRSRSALSLG* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0706 860 MobiDBLite consensus disorder prediction 65 91 - -
Vvi7g0706 860 ProSiteProfiles SET domain profile. 689 823 IPR001214 GO:0005515
Vvi7g0706 860 ProSiteProfiles Pre-SET domain profile. 590 686 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi7g0706 860 Gene3D SET domain 534 848 IPR046341 -
Vvi7g0706 860 Pfam Pre-SET motif 534 681 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi7g0706 860 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 6 854 - -
Vvi7g0706 860 CDD SET_SETDB-like 556 823 - -
Vvi7g0706 860 SMART set_7 689 829 IPR001214 GO:0005515
Vvi7g0706 860 MobiDBLite consensus disorder prediction 97 116 - -
Vvi7g0706 860 MobiDBLite consensus disorder prediction 184 199 - -
Vvi7g0706 860 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 -
Vvi7g0706 860 MobiDBLite consensus disorder prediction 283 325 - -
Vvi7g0706 860 Pfam SET domain 701 823 IPR001214 GO:0005515
Vvi7g0706 860 SUPERFAMILY SET domain 541 846 IPR046341 -
Vvi7g0706 860 Gene3D - 1 60 IPR043017 -
Vvi7g0706 860 MobiDBLite consensus disorder prediction 98 116 - -
Vvi7g0706 860 SMART preset_2 531 673 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi7g0706 860 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 855 IPR025776 -
Vvi7g0706 860 FunFam SET-domain containing protein lysine methyltransferase family protein 534 848 - -
Vvi7g0706 860 MobiDBLite consensus disorder prediction 122 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0706 Vvi-Chr7 7299440 7313963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0706 665 848 C2H2 Transcription Factor Family AT2G23740 39.683 3.40e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi7g0706 Pre-SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0706 - - vvi:100243013 1753.8