Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0704 ATGCCAGGTCGCGGTGGATCCGCGGGGAACAAGTTTCGGATGTCTCTGGGTCTGCCGGTGGCGGCTACGGTGAACTGCGCCGACAACACCGGAGCCAAGAACCTCTACATCATCTCCGTCAAGGGAATCAAGGGCCGCCTCAACCGGCTGCCGTCTGCCTGCGTCGGCGACATGGTCATGGCCACCGTGAAGAAGGGAAAACCCGATCTCAGGAAGAAGGTTATGCCCGCAGTCATCGTGCGCCAGAGGAAGCCCTGGCGCCGAAAGGACGGAGTCTACATGTACTTTGAAGATAATGCCGGTGTCATTGTGAATCCCAAGGGAGAAATGAAAGGATCTGCCATCACTGGCCCAATTGGAAAAGAGTGTGCTGATCTCTGGCCTAGAATTGCAAGCGCTGCCAATGCTATTGTCTAA 417 0.5612 MPGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0704 138 FunFam 60S ribosomal protein L23 1 138 - -
Vvi7g0704 138 Hamap 50S ribosomal protein L14 [rplN]. 17 138 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi7g0704 138 SUPERFAMILY Ribosomal protein L14 9 138 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi7g0704 138 Gene3D Ribosomal protein L14 2 138 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi7g0704 138 ProSitePatterns Ribosomal protein L14 signature. 77 103 IPR019972 -
Vvi7g0704 138 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 18 137 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi7g0704 138 SMART Ribosomal_L14_2 17 138 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi7g0704 138 Pfam Ribosomal protein L14p/L23e 20 138 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0704 Vvi-Chr7 7264336 7268215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0704 3 138 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.059 1.72e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0704 K02894 - pvy:116140015 277.33