Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0701 ATGGAGGCACACTCTACTCTATCCATTCGGGGGTCAGGTTCAAAGCAGCTTAATAACCTGGGAGCATCTGGAGCTTTGTCTTCTTCGTTGTCTGTTCTTCCTACCTCTCTTGAAGAGACACATCCCAAGTTGCCAGACTCTCAACAAGTTTATGTGGGAAGGGAAATCATGACAAGGCCTCAGGCTATGCATGCTAGTCCTTTACCCTCCAACAGCGGTGCAGTTGGTCATATTTTTTCATCATCCTCAGGATACTCCACAGACCTTCATTTCTCATCTGTTTCACCCCATGAAAGGCATTCAAGAAGTGCTCCTTTTATTTCTCAGTCATCAAGTAATGGGACATCTTTGCCATTAGCACATTCTTCACATTCAGGACAGCTTCAGTCTACAGCATCAAGTCATTACATTGAAGAAAATAACAATGCTTCCTGGTGTACAGATTCACTATCCGGTTTTCTTGATTTTCCTGTAAACACCCCTGTCCAGAGTAGTCAAATAGAAAGTAGGAGTGCAAGTGGTGTCATTGCATCTGAGGACCTTAGCAAACGGCATGATTGGCAAGAATGGGCAGACCAGCTAATCACTGATGATGATGCTCTGAATTCGAATTGGAATGAGTTCCTTGTTGACACCAATGTTGCAGATGTAGAACCAAAGATGGCTTACCAAGTGCCTAAACCATCATCAAACTTCTCAGCAAACCAGCCCCAGGTTCATCCACAGCTTTCTGCTCCATCTGGAGAAGTTCACAATGTTGTTACTCCCTCATCGTCAGTAAACACTGCTCCAACCAAGCCACGGATGCGTTGGACACCAGAACTTCATGAGGCTTTTGTGGAGGCAGTCAACCAACTTGGTGGTAGTGAAAGAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAGGATCCTCTGAGAAAAGATTGACATCCATCGAAGAAATGTCGTCTCTGGACTTGAAAACAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAGATACAAAGAAATTTACAGCTGCGAATAGAAGAACAAGGGAGATACCTCCAAATGATGTTTGAGAAGCAATGCAAATCAGGAATTGACAAGCTGAAGACATCATCATCTGCACTGGAAAACCCCTCTTCTTTATCATCAGATACCATACCAAATTCCCCTGCTAAAAGTGAAATGGAAGCATCCCATGATGAGCATGACAAAACAGGAACCGACCTAGTTAATGACAGCAAAACATCAAGCGGAAATCCCCAAAAACTGAGCAGGGAGCAAAATGCAATTGAAACTGAAGCTCTTCTGGGTAGCGAGCAAATTGCAATTGAACCTGAAGCTCCTAGGAATGTTGAACAAGATGCTGCTTGTGAATCTAATTCCCAACCCTCGAAGCGTGCAAAAGTGGATGAGTCATCCATATCATCTGTCAAATCAGCATCGAGCTGA 1554 0.4395 MEAHSTLSIRGSGSKQLNNLGASGALSSSLSVLPTSLEETHPKLPDSQQVYVGREIMTRPQAMHASPLPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRSAPFISQSSSNGTSLPLAHSSHSGQLQSTASSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWADQLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQLSAPSGEVHNVVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSSLSSDTIPNSPAKSEMEASHDEHDKTGTDLVNDSKTSSGNPQKLSREQNAIETEALLGSEQIAIEPEAPRNVEQDAACESNSQPSKRAKVDESSISSVKSASS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0701 517 MobiDBLite consensus disorder prediction 429 444 - -
Vvi7g0701 517 MobiDBLite consensus disorder prediction 404 517 - -
Vvi7g0701 517 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 263 323 IPR017930 -
Vvi7g0701 517 MobiDBLite consensus disorder prediction 445 469 - -
Vvi7g0701 517 Pfam MYB-CC type transfactor, LHEQLE motif 351 398 IPR025756 -
Vvi7g0701 517 SUPERFAMILY Homeodomain-like 264 320 IPR009057 -
Vvi7g0701 517 Coils Coil 354 374 - -
Vvi7g0701 517 MobiDBLite consensus disorder prediction 404 427 - -
Vvi7g0701 517 MobiDBLite consensus disorder prediction 489 517 - -
Vvi7g0701 517 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 320 IPR006447 GO:0003677
Vvi7g0701 517 Gene3D - 265 324 - -
Vvi7g0701 517 Pfam Myb-like DNA-binding domain 268 319 IPR001005 -
Vvi7g0701 517 FunFam Myb family transcription factor 265 323 - -
Vvi7g0701 517 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 244 492 IPR044848 GO:0003700
Vvi7g0701 517 MobiDBLite consensus disorder prediction 90 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0701 Vvi-Chr7 7211328 7220710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0701 55 408 G2-like Transcription Factor Family AT4G28610 54.596 9.78e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi7g0701 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0701 - - vvi:100244545 974.156