Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0700 ATGGCCTCAAACACCATGGCAGGCCTTGTTGCAGGTTCCCATACCCGAAATGAGATGCATGTTTTGCATGGCGAGCAACGGCCTCCCACCCGCCAGTCTGTACCCAAACTATGTCGTGTTTGTGGCGATGAGATCGGAGTTAAAGCGGATGGTGAGTTGTTTGTAGCCTGCCATGAGTGTGGGTTCCCAGTTTGCAAGCCTTGTTATGAGTATGAAAGGAGTGAAGGAAACCAGTGCTGTCCCCAGTGTAACACTCGCTATAAGCGTCACAAAGGTTGCGCTAGAGTTGCAGGAGATGATGAAGGCAGCTTGGATGGAGATGATTTCAATGATGAATTTCAGATTAAGAACACGCGAGATCAGCAGAATGTCTTTGCTCCTTCGGAAAATGGAGACTATAATCCGCAGCAATGGCATGCAAATGGCCAAGCCTTCTCTGCAGCAGGGAGTGTTGCTGGAAAGGATTTTGAAGGTGAGAAAGATATTTACAACAATGATGAATGGAAAGACAGGGTAGAGAAATGGAAAACCAGGCAAGAAAAGAAAGGTTTAATTAGCAAAGATGGAGGAAATGATCCAGGCGATGATGATGACTTCCTTCTGGCTGAGGCCCGGCAACCATTGTGGAGAAAAGTCCCAATCGCATCAAGCAAAATCAGCCCATATCGCATAGTCATCGTCCTCCGTCTAGTCATTCTTGCTTTCTTCTTCCGTTTCCGCATCTTAACCCCAGCTTATGATGCTTTTCCCTTGTGGCTCATCTCTGTCATTTGTGAGATCTGGTTCGCTTTCTCTTGGATACTTGACCAGTTCCCCAAATGGCAACCCATCAACCGTGAAACCTACCTGGAACGCCTGTCAATGAGGTTTGAGCGTGAGGGTGAGCCCAACCGTCTCTCCCCAGTTGATGTCTTTGTAAGTACTGTGGACCCTCTTAAGGAACCACCAATCATAACTGCAAACACAGTTCTATCCATCTTGTCCCTTGATTATCCGGTCGAGAAGGTGAGTTGTTATGTATCGGATGATGGCGCATCCATGCTTCTTTTCGATTCTCTAGCAGAAACTGCTGAGTTTGCAAGGAGATGGGTGCCATTCTGCAAGAAGCATAGCATTGAGCCCAGGGCTCCTGAGTTCTACTTCTCTCAGAAAATTGACTACTTGAAAGATAAAGTGGACCCCAGCTTTGTGAAGGAGCGCAGAGCCATGAAAAGAGAGTATGAAGAGTTCAAAGTGAGGATTAACGCATTGGTAGCAAAGGCTCAAAAGAAACCAGAAGAAGGATGGACCATGCAGGATGGCACCCCATGGCCTGGAAACATCACTCGCGATCATCCCGGGATGATTCAGGTTTACCTTGGTAGTGAAGGTGCACTTGATGTAGAAGGTAAGGAGCTGCCACGGCTCGTGTATGTTTCTCGTGAGAAACGACCTGGCTATCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGAGTCTCTGCAGTGCTTACCAATGCACCCTTTATGTTGAATTTGGATTGTGATCACTACATCAACAACAGCAAGGCTGCAAGAGAAGCCATGTGCTTTCTGATGGATCCACAGCTTGGGAAGAAGCTCTGTTATGTCCAGTTCCCACAGAGGTTCGATGGTATTGATCTCCACGATCGATATGCTAACCGAAATGTTGTATTCTTTGATATCAACATGAAAGGCCTAGATGGGATTCAAGGGCCGGTGTATGTTGGTACTGGATGTGTCTTCAACCGGCAGGCATTGTATGGCTATGATCCACCAGTGTCCGAGAAAAGACCCAAGATGACATGTGACTGCTGGCCTTCATGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAGTCAAAGTCGAAGAAGAAAGTTGAAAGAGGTTTGCTTGGAGGAGTGTATAGCAAGAAGAAGAAAATGATGGGGAAGAACTACTCCAGGAAAGGATCTGGACCAGTCTTTGATCTTGAAGAGATTGAAGAAGGCCTTGAAGGCTATGATGAGTTGGAGAAATCATCCCTTATGTCACAGAAAAACTTTGAGAAACGGTTTGGACAGTCTCCAGTTTTCATTACTTCCACTCTCATGGAAGATGGTGGCCTTCCTGAAGGGACTAATAGCACAGCTCTTATCAAAGAAGCCATCCATGTTATCAGTTGCGGCTATGAAGAAAAAACCGAATGGGGCAAAGAGATTGGATGGATTTATGGTTCAGTTACAGAAGACATTTTGACAGGATTCAAGATGCATTGTAGAGGGTGGAAGTCAGTGTATTGTATGCCAAAGAGAGCGGCTTTCAAGGGATCTGCTCCTATAAATCTATCAGACCGGTTGCACCAAGTTTTGAGATGGGCTCTTGGATCTGTTGAAATTTTCCTTAGTCGTCACTGTCCTCTATGGTATGGTTATGGAGGAAAGTTGAAATGGCTGGAGAGGCTTGCTTACATTAACACCATTGTTTATCCCTTCACTTCCATTCCCTTGCTTGCCTACTGTACCATTCCTGCAGTCTGTCTTCTCACAGGAAAATTCATCATCCCAACTCTGACAAACTTTGCTAGCGTATGGTTTATGGCTCTTTTCCTCTCCATCATAGTAACAGGTGTGCTTGAGCTCCGATGGAGTGGTGTTAGCATCCAGGACTGGTGGCGCAATGAACAATTCTGGGTGATTGGTGGTGTCTCAGCTCACCTTTTCGCCGTTTTCCAGGGCCTCCTCAAGGTTCTTGCTGGAGTTGATACCAACTTCACTGTAACATCAAAAGCAGCAGATGATGCTGAGTTTGGAGACCTCTACCTCTTCAAATGGACTACCCTTCTCATCCCACCAACCACTCTTATAATCCTGAATATGGTTGGAGTTGTAGCTGGAGTTTCAGATGCCATCAACAATGGTTATGGTTCATGGGGACCTTTATTTGGGAAACTATTTTTTGCCTTCTGGGTCATTGTCCATCTCTATCCATTCCTCAAGGGTTTGATGGGAAGGCAAAACAGAACTCCTACCATTGTAGTCCTTTGGTCCATCCTTCTCGCTTCGATTTTCTCACTGGTTTGGGTTCGAATTGATCCTTTCCTGCCTAAACAAACAGGCCCAGTTCTTAAACAATGTGGTGTCGAATGCTAG 3135 0.4603 MASNTMAGLVAGSHTRNEMHVLHGEQRPPTRQSVPKLCRVCGDEIGVKADGELFVACHECGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCARVAGDDEGSLDGDDFNDEFQIKNTRDQQNVFAPSENGDYNPQQWHANGQAFSAAGSVAGKDFEGEKDIYNNDEWKDRVEKWKTRQEKKGLISKDGGNDPGDDDDFLLAEARQPLWRKVPIASSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFAFSWILDQFPKWQPINRETYLERLSMRFEREGEPNRLSPVDVFVSTVDPLKEPPIITANTVLSILSLDYPVEKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKHSIEPRAPEFYFSQKIDYLKDKVDPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWTMQDGTPWPGNITRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQLGKKLCYVQFPQRFDGIDLHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKVERGLLGGVYSKKKKMMGKNYSRKGSGPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFITSTLMEDGGLPEGTNSTALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNFASVWFMALFLSIIVTGVLELRWSGVSIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAADDAEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPVLKQCGVEC* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0700 1044 CDD mRING-HC-C4C4_CesA 36 86 - -
Vvi7g0700 1044 FunFam Cellulose synthase 419 593 - -
Vvi7g0700 1044 FunFam Cellulose synthase 21 112 - -
Vvi7g0700 1044 Pfam Zinc-binding RING-finger 29 101 IPR027934 -
Vvi7g0700 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 443 594 IPR029044 -
Vvi7g0700 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 315 865 IPR029044 -
Vvi7g0700 1044 SUPERFAMILY RING/U-box 24 103 - -
Vvi7g0700 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 112 IPR013083 -
Vvi7g0700 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 205 1011 - -
Vvi7g0700 1044 Coils Coil 400 420 - -
Vvi7g0700 1044 Pfam Cellulose synthase 302 1037 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0700 Vvi-Chr7 7204960 7209235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0700 7 1044 Cell Wall Biosynthesis AT5G17420 67.387 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0700 K10999 - vvi:100241197 2097.01