LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi7g0690	ATGGACTCAGACGAAGGAAAGCTATTTGTAGGAGGCATACCATGGGACACTACAGAGGAGAAGCTCAAAGAGTACTTTAACCAGTACGGGGACGTCACGCAGACAGTTATTATGCGGGACAAGACCACTGGTCGACCCAGAGGCTTTGGCTTTGTGGTATTCGCAGATCCTTCCGTTCTCGATGCAGTTCTTCAGGAGAAGCACACCATTGATGGGAGAACGGTGGAGGCTAAAAGGGCTTTATCAAGAGAAGAACAGCACACCTCCAGACCTGGAAATTCTAATACTGGCAGAAGCTCATCAGGCATGGGAGGAAATTTTAAAACCAAAAAGATATTTGTTGGAGGGTTGCCTTCCACCCTTACTGAGGAAGGATTTCGTCAGTACTTTGAGACTTATGGTCATGTAACGGATGTAGTAGTAATGTATGACCAAAATACTCAACGTCCCCGTGGGTTTGGATTCATATCCTTTGACACTGAAGATGCAGTTGATCGAGTTTTACATAAGACCTTCCATGATTTGAATGGTAAGCTTGTAGAGGTGAAACGAGCCCTCCCTAAAGATGCAAATCCTGGTGGTGGTGGCCGTAGTGGAGGCTACCAAGGCTATGGTGCTTCTGGTGCTAATACAAGTGCATATGAAGGTAGAATGGATGGTAATAGATTCATGCCACCTCAGACCACTGGTGGTGGTTTCCCACCATATTCTGGCTATGGTGCACCAGGTTATGGCTATGGAGCAGCAAATAGTGCTGTTGGTTATGGTGGTTATGGGAGTTATGGTGTTGGTGGTTATGGAAGTGCCAATACTGGATTTGGCGGTCCTGCTGGGGCGTATGGAAACCCGAATGCTCCTAATGCTGGTTATGTAAGTGGCCCACCTGGTGCTATGAAAAGCCAATGGAACAACCAAACTCCTTCTGGATATGGTGCTTCAGGCTATGGTTCAAATGCAGCCTATGGAGCTACAGGTCCTTGGAATGCTCCGGGTGGTGCTGGTGTTTCTGGACCAATGGGTCAATCTCCAAGTGGCGCTTCTGGATATGGAAGTCAAGGTTTTGGATATGGTAACTATGGTGGGAGTGATGGTTCTTATTCTGGGGGATATGGGGCTGCTGGTGGCCGTGCTGGAAGTGCACCTAGTTCTGGTGGTAGTGCTAGCGGAGAACAGGGGACAGGTGGTGGCTACATGGGGAGTGGCTATGGTGATGCCAATGGAAATCAAGGGTATTCAAATGCTGGCTGGAGGTCTGACCCTTCACAAGGTGCTGCTGGTTATGGTGGTGGCTATGGTGGTGCTCAGAGGCAGGCCCAACAGCAGTGA	1326	0.4887	MDSDEGKLFVGGIPWDTTEEKLKEYFNQYGDVTQTVIMRDKTTGRPRGFGFVVFADPSVLDAVLQEKHTIDGRTVEAKRALSREEQHTSRPGNSNTGRSSSGMGGNFKTKKIFVGGLPSTLTEEGFRQYFETYGHVTDVVVMYDQNTQRPRGFGFISFDTEDAVDRVLHKTFHDLNGKLVEVKRALPKDANPGGGGRSGGYQGYGASGANTSAYEGRMDGNRFMPPQTTGGGFPPYSGYGAPGYGYGAANSAVGYGGYGSYGVGGYGSANTGFGGPAGAYGNPNAPNAGYVSGPPGAMKSQWNNQTPSGYGASGYGSNAAYGATGPWNAPGGAGVSGPMGQSPSGASGYGSQGFGYGNYGGSDGSYSGGYGAAGGRAGSAPSSGGSASGEQGTGGGYMGSGYGDANGNQGYSNAGWRSDPSQGAAGYGGGYGGAQRQAQQQ*	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi7g0690	441	CDD	RRM1_hnRNPA_hnRNPD_like	8	78	-	-
	Vvi7g0690	441	FunFam	heterogeneous nuclear ribonucleoprotein 1	105	217	-	-
	Vvi7g0690	441	Gene3D	-	105	222	IPR012677	-
	Vvi7g0690	441	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	6	82	IPR000504	GO:0003723
	Vvi7g0690	441	CDD	RRM2_Hrp1p	111	188	-	-
	Vvi7g0690	441	SMART	rrm1_1	111	183	IPR000504	GO:0003723
	Vvi7g0690	441	SMART	rrm1_1	7	78	IPR000504	GO:0003723
	Vvi7g0690	441	MobiDBLite	consensus disorder prediction	373	441	-	-
	Vvi7g0690	441	SUPERFAMILY	RNA-binding domain, RBD	109	211	IPR035979	GO:0003676
	Vvi7g0690	441	FunFam	Heterogeneous nuclear ribonucleoprotein 1	5	87	-	-
	Vvi7g0690	441	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	1	441	-	-
	Vvi7g0690	441	MobiDBLite	consensus disorder prediction	405	419	-	-
	Vvi7g0690	441	MobiDBLite	consensus disorder prediction	87	106	-	-
	Vvi7g0690	441	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8	75	IPR000504	GO:0003723
	Vvi7g0690	441	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	169	IPR000504	GO:0003723
	Vvi7g0690	441	Gene3D	-	4	88	IPR012677	-
	Vvi7g0690	441	MobiDBLite	consensus disorder prediction	74	106	-	-
	Vvi7g0690	441	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	187	IPR000504	GO:0003723
	Vvi7g0690	441	SUPERFAMILY	RNA-binding domain, RBD	3	105	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi7g0690	Vvi-Chr7	7057892	7062128	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi7g0690	8	185	Eukaryotic Initiation Factors Gene Family	AT1G71770	23.596	2.91e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi7g0690	K14411		-	vvi:100263471	637.876