Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0682 ATGTGTAGTAATTTCCGCCGTGGCAGACTAGGGTTACTCCCAAGCTGGAGGCGTATTGAGGGAGCGTCAATGACCCAGCTGCATTTTCTTGGGAATATTACTCCATTTGTCATCAGATGTTTTTCATCGTCCAAACAGCGTTCTTTTACAGTTTCTTACCTCATAAGCTCATGTGGGTTGTCCCCAGAAACGGCCATTTCTACATCCAAGAAGGTACAATTTGAAAACCCTAAAAACCCAGACTCTGTTCTTGCCCTTCTCAGAAACCATGGATGCACCGATACCCATATCTCCAAAATTGTAGCCAAGCTTCCTCTACTGCTCTTAGCCAATCCTGTGAAGACCCTTTTGCCCAAACTCCAGTTTCTTGGTTCTGCAGGCCTCTCCCATGTGGATCTCGCAAAGATTCTCGCTTCAACCCCAAATATTTTGTGTAGGAGCTTGGAAAAGAATTTAATTCCTACTTATAATCTCTTCAAGGGTGTGGTCATCGGTGACGAAAATGCAGCAAAGGCTCTCGTAAGGCATTGCTGGATTCCTTGTGAAAATTTGGAGAAGACCATTCCTCCTAATGCCGCGCTTCTGAGAGAAATTGGAGTTCCTATGGCGTATATCTCATTCTTAGCAACCTTTTTTACTATACTGGCCCAAAAGAGTGATAAGTTCAGCAAAGATGTCAATAAAATTATGGAAATGGGATTTGAACCTCAGAAACTGATCTTCGTGAATGCACTCCAGATGTTTTTTCAAATGTCTGAATCAACTTGGAAACAGAAGATGAAGGCCTATAGGAGGTGCGGTCTGTCCGAGGATGAGATTATGTTGGCCTTCAGAAATCATCCCTTATGTTTCCAATTGTCTGAAAAGAAAATCATGAGCACCGTGGATTATCTTGTGAACATGGGTTGGCAGCCTGCAGCCATTGCCAGGGTCCCAGTAGCCCTCTTTTTCAATTTGGAAAGGAGGATTGTTCCAAGGTGTTCAGTGGTGAAAGTTCTGTTATTGAAGGGGTTGGTAAAGAAGGATTTGTGTTTAGGCACTTTTCTGAAGCTCACCGAGAGGGCTTTCATGGATAGGTTCATCATCAAATATGAGAAGGATGTGCCTCAGTTGTTAGATGTATATCATGGAAAAGTGGGCATTCAGGAGCTTGGCCTTGTAACCGATTGA 1170 0.4342 MCSNFRRGRLGLLPSWRRIEGASMTQLHFLGNITPFVIRCFSSSKQRSFTVSYLISSCGLSPETAISTSKKVQFENPKNPDSVLALLRNHGCTDTHISKIVAKLPLLLLANPVKTLLPKLQFLGSAGLSHVDLAKILASTPNILCRSLEKNLIPTYNLFKGVVIGDENAAKALVRHCWIPCENLEKTIPPNAALLREIGVPMAYISFLATFFTILAQKSDKFSKDVNKIMEMGFEPQKLIFVNALQMFFQMSESTWKQKMKAYRRCGLSEDEIMLAFRNHPLCFQLSEKKIMSTVDYLVNMGWQPAAIARVPVALFFNLERRIVPRCSVVKVLLLKGLVKKDLCLGTFLKLTERAFMDRFIIKYEKDVPQLLDVYHGKVGIQELGLVTD* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0682 389 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 SMART mt_12 239 269 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 SMART mt_12 274 304 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 Pfam mTERF 84 302 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 Pfam mTERF 213 356 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 Gene3D Transcription termination factor 3, mitochondrial 147 368 IPR038538 -
Vvi7g0682 389 PANTHER CGI-12 PROTEIN-RELATED 45 364 IPR003690 GO:0003690|GO:0006355
Vvi7g0682 389 FunFam Mitochondrial transcription termination factor-like 148 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0682 Vvi-Chr7 6891553 6892722 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0682 mTERF 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0682 K15032 - vvi:100249689 762.681