Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0681 ATGATAAAGGAGGCTCGTGGTGGTTCAGGATGTTTCTCATCGTCCAAACAGCATTCTTTTACAGTTTCTTACCTCATAAACTCATGTGGGTTGTCCACAGAAAGTGCCATTTCTACTTCCAAGAAGGTACAATTTGAAAACCCTAAAAATCCAGACTCTGTTCTTACCCTTCTCAAGAACCATGGATGCAACGATACCCATATCTCCAAAATTGTAGCCAAGCTTCCTCTACTGCTCTTAGCCAATCCTGAGAAGACCCTTTTGCCTAAACTCCAGTTTCTAGGTTCGGTAGGCCTCTCCCATGTGAATCTCGCAAAGATTTTGGCTTCAAACCCAAGTATATTGCACAGGAGCTTGGAAAATAATCTAATTCCGACTTACAATCTCCTCAAGGGTGTGGTAATCGGCGATGAAAATGCAGCAAAGGCTGTCGTGAGGCATTGCTGGATTCCTAGTGAAGATTTGGAGAAGACCATTGCTCCTAATGTCAGGCTTCTGAGAGAAATTGGAGTTCCTATGGCGCATATCTCATTCTTAGCAACCTTTTTCTCTATACTGGCCCAAAAGAGTGATAAGTTCAGCAAAGATGTCAACAAAGTTATGGGAATGGGATTTGATCCTCAGAAAATGGTCTTCGTGAATGCACTCCATGTGATTTGCCAAATGTCTGAATCAAATTGGTATCAGAAGATTAAGACCTATAGGAGGTGCGGTCTGTCCGAGGATGAAATTATGTTGGCCTTCAGAAATCATCCTATATGTTTCCAATTGTCTGAGAAGAAAATCATAAGCACCATGGATTATCTTGTGAACATGGGTTCGCCGCCTGCAGCCATTGCCAGGGCCCCAGTAGCTCTCTTTTTCAATTTGGAGAGGAGGATTGTTCCCAGGTGTTCAGTGGTGAAACTTCTGTTATTGAAGGGGTTGGTAAAGAAATATTTGTGTTTGGGCACTTTTCTTAACCCCACTGAGAGGGCTTTCCTGGATAGGTTCATCATCAAATATCAGGAGGATGTTCCTCAGCTGTTAGATGTATATAATGGAAAAGTGGGCATTCAGGAACTTGGACTTGAAATGTATGAAGCAGTAGCAGCATTTGGACTTGGCCATTGCAATATTTTTAATATTTTTAATACTTAA 1140 0.4184 MIKEARGGSGCFSSSKQHSFTVSYLINSCGLSTESAISTSKKVQFENPKNPDSVLTLLKNHGCNDTHISKIVAKLPLLLLANPEKTLLPKLQFLGSVGLSHVNLAKILASNPSILHRSLENNLIPTYNLLKGVVIGDENAAKAVVRHCWIPSEDLEKTIAPNVRLLREIGVPMAHISFLATFFSILAQKSDKFSKDVNKVMGMGFDPQKMVFVNALHVICQMSESNWYQKIKTYRRCGLSEDEIMLAFRNHPICFQLSEKKIISTMDYLVNMGSPPAAIARAPVALFFNLERRIVPRCSVVKLLLLKGLVKKYLCLGTFLNPTERAFLDRFIIKYQEDVPQLLDVYNGKVGIQELGLEMYEAVAAFGLGHCNIFNIFNT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0681 379 PANTHER CGI-12 PROTEIN-RELATED 16 336 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 276 310 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 210 240 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 69 100 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 SMART mt_12 245 275 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 Gene3D Transcription termination factor 3, mitochondrial 114 341 IPR038538 -
Vvi7g0681 379 FunFam Mitochondrial transcription termination factor-like 119 339 - -
Vvi7g0681 379 Pfam mTERF 55 269 IPR003690 GO:0003690|GO:0006355
Vvi7g0681 379 Pfam mTERF 184 327 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0681 Vvi-Chr7 6885910 6888273 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0681 mTERF 9.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0681 K15032 - vvi:100244540 712.99