Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0680 ATGTGGCAGGCAGCTTCCACAGCCCAACTGCATTTTCTTCGAAATACAACTCCATATATCTTCAGAAGTTTCTCAGCATCCAACCAGCATTCTTTCACAGTGTCTTACCTCGTAAACTCATGTGGGTTGTCCCCAGAAACTGCTATTTCTGCATCCGGGAAGATACGCTTTGAAAACCCTAAAAACCCAGATTCTGTTCTCGCTCTTCTCAGAAACTCTGGATGTACCAACACCCATATCACCAAAATTGTAACCAAGCTTCCTTCACTGCTTTTGGTCAATCCTGAGAAGACCCTTTTACCCAAACTCGAATTTTTTCGTTCTATGGACCTTTCTGGTGCTGATCTTGCTAGCATTCTCTCTTCTAGGCCAAGTATCTTGAGGAAGAGCTTAAAAAATGTTCTAATTCCCAAGTATAATTTCCTCAAGAGTCTAAATATCAGTAATGAAGATGCCGTGAAGGTTCTTAAGAGGTCATCCTGGAGTTCTAGTGGAAATCTGGAGAGGACCATAGCTGCCAATATTGCAGTTCTGAGAGAAATTGGAGTTCCCATATCCCACATCTCATTTTTAGTGGCGCGTTATCACTCAATCGGCCAAAGGAGCGATAAATTCAGTGAAAATGTCAAGACGGTTGTGGAAATGGGATTCAATCCTTTGAAATTTACCTTCCTGAATGCTCTCCAATCATTCTGTCAAATGACTGAATCAACTCGGCAACAAAAAATGGAGATGTATAGGGGGTGGGGTTGGTCTGAAGATGAGATTCTGTTGGCATTCAGAACTTGTCCACAATGTATGCAATTGTCTGAGAACAAAGTTACAAAGGTGTTGGATTTCCTTGTGAACAAAATGGGTTGGCAGCCTGCAGTTGTTGCTAGGGCGCCAATCGCTCTCTGCCTCAATTTTGAGAAGAGGGTTGTTCCAAGGTGTTCAGTGGTGAAGGTTCTGTTGTTGAAAGGGTTGGTAAAGAAGGATTTAAAGTTAGGTCATTTTCTGAGTGTCACTGAGGGGGATTTCGTGGATAAGTATGTAATAAAAAATCTGGATGACATTCCTCAGTTATTAGATCTATATCAAGGGAAGCTTCCTTTACAAATGTGTATTAATTTTATCTGTAAGAGACTAGGGTTATTCCCAAAAAGGTGGCAAGTGGTGGCAGATTCCACAGCCCAACTGCATTTTCTTCGAAATCCAACTCCATTTATCATCAGAAGTTTCTCAGCATCCAACCAGCATTCTTTCACAGTGTCTTACCTCGTAAACTCATGTGGGTTGTCACCAGAAACTGCTATTTCTGCATCCGGGAAGATACACTTTGAAAACCCTAAAAACCCTGATTCTATTCTCGCTCTTCTCAGAAACTCTGGATGCACCAACACCCATATCACCAAAATTGTAACCAAGCTTCCTTCACTGCTCTTGGTCAATCCTGAGAAGACCCTTTTGCCCAAACTCGATTTTTTTGGTTCTATGGGCCTTTCTGGTGCTCGTCTCGCAAGCATTCTCTCTTCTGAGCCAATTGTCTTGATGAGGAGCTTAGAAAACGCTCTAATTCCCAAGTATAATTTCCTCAAGAGTTTACAGATCAGTAATGAAGATGCCATAAAGATTCTCAAGAGTTCATGCTGGATTTCTTGTGGAAATCTGGAGAGGATCATAGCTACCAATATAGCAGTTATGAGAGAAATCGGAGTTCCCATATCCCATATCTCAGTTTTAGTGGCACGTTATCACACAATCTGCCAAAGAAGTGATAAATTCAGTGAAAATGTCAAGAAGGTTGTGGAAATGGGATTTAATCCTTTGAAATTTGCCTTCGTGAATGCACTCCAAGCAGTCTGTCAAACGACTGAATCAACTTGGCAACAAAAAATGGAGATGTATAGGAGGTGGGGTTGGTCTGAAGATGAGATTTTGTCGGCATTCAGAAATCGTCCACAATGTATGCAATTGTCTGAGAAGAAAGTTACCAAGGTGTTGGATTTCCTTGTGAACAAAATGGGTTGGCGGCCTGCAGTTGTTGCTAGGGCACCAATCGCTATCTGCCTCAATTTTGAGAAGAGGGTTGCTCCAAGGTGTTCAGTGGTGAAAGTTCTGTCATTGAAAGGGTTGATAAAGAAGGATCTGAAGTTAGGTACTTTTCTGAATCTCCCTGAGGGGGATTTCCTGGATAAGTATGTAATCAAATATCAGGATGAAATTCCTCAGTTACTAGATGTATATCAAGGGAAGGTGGAAATGTGTAGTATTTTCCTCTGTGGAAGAACAGGGTTACCCCCAAGTTGGAGGCGCATTGGGGGAGCGGCAATGACCCAGCTGCATTTTCTGGGGAATATTACTCCATTTGTTATCAGATGTTTCTCGTCGTCCAAACAACATTCTTTTACAGTTTCTTACCTCATGAACTCATGTGGGTTGTCCCCAGAAACTGCTATTTCTACATCCAAGAAGGTGCAATTTGAAAACCCTGAGAACCCAGACTCTGTTCTTGCCCTTCTCAGAAACCATGGATGCACCGATACTCATATCTCGAAAATCGTATCCAAGCATCCTCTACTGCTCTTAGCCAATCCTGAGAAGACCCTTTTGCCCAAACTCCAGTTTCTTGGTTCTGTAGGCCTCTCCCATGTGGATCTCGCAAAGGTTCTCGCTTCAACCCCAAGTATCTTGCGTATGAGCTTGGAAAAGACTCTAATTCCTACTTATAATCTCCTCAAGGGTGTGGTCATCGGTGATGAAAATGCAGTAAAGGCTCTGACGAAGCAGTGCCGGATTTGTTGTGGAAATGTGGAGAAGACCATTGCTCCTAATGCCACGCTTCTGAGAGAAATTGGAGTTCCCATGGCGCATATCTCATTCTTGGTTACTAATTATCCTACACTGTGCCAAAAAAGGGATAAGTTCAGTAAAACTGTAAAGAAAGTTATGGAAATGGGTTTTAATCCTCAGAGACTGCTCTTCGTGAATGCACTCCAGGTGATTTGTCAAATGTCTGAATCAACTTGGGAACAGAAGATAAATGCCTATAAGAGGTGCGGTCTGTCGGAGGATGAGATTGTGTTGGCATTCAGAAATCATCCCATATGTTTCCAATTGTCTGAGAAGAAAATCATGAGCACCATGGATTATATTGTGAACATGGGTTGGCAGCCTGGAACCATTGCCAGGGTCCCAGCAGTTCTCTTTTTCAATTTGGAGAGGAGGATTGTTCCCAGATGTTCAGTGGCGAAAGTTCTGTTATTGAAGGGGTTGGTAAAGAAGGATTTGTGTTTAGGCACTTTTCTGAAGCTCACTGAGAGGGCTTTCATAGATAGGTTCATCATCAAATATCAGAAGTATGTTCCTCAGTTGTTAGATGTATATCATGGAAAAGTGGGCTTTCAGGAACTTGGCCTTGTATCCCAATGA 3411 0.423 MWQAASTAQLHFLRNTTPYIFRSFSASNQHSFTVSYLVNSCGLSPETAISASGKIRFENPKNPDSVLALLRNSGCTNTHITKIVTKLPSLLLVNPEKTLLPKLEFFRSMDLSGADLASILSSRPSILRKSLKNVLIPKYNFLKSLNISNEDAVKVLKRSSWSSSGNLERTIAANIAVLREIGVPISHISFLVARYHSIGQRSDKFSENVKTVVEMGFNPLKFTFLNALQSFCQMTESTRQQKMEMYRGWGWSEDEILLAFRTCPQCMQLSENKVTKVLDFLVNKMGWQPAVVARAPIALCLNFEKRVVPRCSVVKVLLLKGLVKKDLKLGHFLSVTEGDFVDKYVIKNLDDIPQLLDLYQGKLPLQMCINFICKRLGLFPKRWQVVADSTAQLHFLRNPTPFIIRSFSASNQHSFTVSYLVNSCGLSPETAISASGKIHFENPKNPDSILALLRNSGCTNTHITKIVTKLPSLLLVNPEKTLLPKLDFFGSMGLSGARLASILSSEPIVLMRSLENALIPKYNFLKSLQISNEDAIKILKSSCWISCGNLERIIATNIAVMREIGVPISHISVLVARYHTICQRSDKFSENVKKVVEMGFNPLKFAFVNALQAVCQTTESTWQQKMEMYRRWGWSEDEILSAFRNRPQCMQLSEKKVTKVLDFLVNKMGWRPAVVARAPIAICLNFEKRVAPRCSVVKVLSLKGLIKKDLKLGTFLNLPEGDFLDKYVIKYQDEIPQLLDVYQGKVEMCSIFLCGRTGLPPSWRRIGGAAMTQLHFLGNITPFVIRCFSSSKQHSFTVSYLMNSCGLSPETAISTSKKVQFENPENPDSVLALLRNHGCTDTHISKIVSKHPLLLLANPEKTLLPKLQFLGSVGLSHVDLAKVLASTPSILRMSLEKTLIPTYNLLKGVVIGDENAVKALTKQCRICCGNVEKTIAPNATLLREIGVPMAHISFLVTNYPTLCQKRDKFSKTVKKVMEMGFNPQRLLFVNALQVICQMSESTWEQKINAYKRCGLSEDEIVLAFRNHPICFQLSEKKIMSTMDYIVNMGWQPGTIARVPAVLFFNLERRIVPRCSVAKVLLLKGLVKKDLCLGTFLKLTERAFIDRFIIKYQKYVPQLLDVYHGKVGFQELGLVSQ* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0680 1136 SMART mt_12 953 982 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 1021 1051 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 881 912 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 640 671 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 81 112 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 536 567 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 605 635 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 845 876 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 117 148 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 188 218 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 986 1016 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 672 703 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 1052 1086 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 464 495 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 572 601 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 917 948 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 SMART mt_12 500 531 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 PANTHER CGI-12 PROTEIN-RELATED 792 1111 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 FunFam Mitochondrial transcription termination factor-like 895 1115 - -
Vvi7g0680 1136 Gene3D Transcription termination factor 3, mitochondrial 894 1116 IPR038538 -
Vvi7g0680 1136 Gene3D Transcription termination factor 3, mitochondrial 129 352 IPR038538 -
Vvi7g0680 1136 Gene3D Transcription termination factor 3, mitochondrial 513 737 IPR038538 -
Vvi7g0680 1136 Pfam mTERF 831 1047 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 Pfam mTERF 616 723 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 Pfam mTERF 1013 1103 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 Pfam mTERF 233 340 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 Pfam mTERF 450 601 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 Pfam mTERF 67 218 IPR003690 GO:0003690|GO:0006355
Vvi7g0680 1136 FunFam Mitochondrial transcription termination factor-like 131 352 - -
Vvi7g0680 1136 FunFam Mitochondrial transcription termination factor-like 514 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0680 Vvi-Chr7 6868624 6878785 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0680 mTERF 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0680 K15032 - vvi:100266863 776.163