Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0679 ATGAGAATCCGCTTCAGCTTTAGAGGACTATCGTCTCTGCCCTATCCACCCCCAAAATGGAGGATTACTGGGAAAATCTTCACAACCCAACTCTCACTTCTTCAAGATGGTTCACTCACATTCAGATTCTTCTCATCATCGCCAACATCCCGATCCGCAAATCCCAAACAATGCTATTTTACAGTATCTTACCTCATCAACTCATGTGGGCTGTCCCCAGATTCTGCTCTCTCCGCTTCCCAAAAGCTTCACTTGGTAACCCCAGAAAGGCCCGACTCTATCCTCTCCCTCCTCAGAAACTATGGAATCACCGACACCCAACTTCCCAAACTCATAAGAGTATTCCCAACTTTGCTTTTGACTGATCCTGAGAAAACCCTTTTGCCCAAACTCGAGTTTCTCAATTCTAAACCCTTTTCAAGGGCTGACCTTGGGAGGGTCCTATCTTCATGTCCAATGATCTTGTCACGGAGCTTGGACAATCAGATTATCCCTTGTTATAATTTTTTCAAGAGCATTCTTCACCTTGATAATAGAGTTGTTTCTGCAATCAAGCGCTCACCCAGGATTTTTCTTGAGGATGTGAACAAGAACATCGTTCCAAATATCACAGCCTTGCAAGAAATTGGAGTGCCTGAATCCTCTATCGTGTTTTTGATAACTTATTATCCCATTGTAGTGCAGCTAAAGCACGACAGGTTTGGTGAAACTGTGAAGAAGGTTATGGAAATGGGATTCGACCCTCTGACAGTGGTATTCATTAAGGCAATCCAAGTGTTTGGTGGAATGAGTAAATCAACTTGGGAACAGAAAATGGAGGTCTACAGGAGGTGGGGTTGGAGCAATGATGAGATTGTGTTGTTGTTTAGAGCTTTTCCCGCATGTATGAGTTTATCTGAGAAGAAAATAATGAGCACAATGGATTTCCTGGTTAATAAGATGGGTTGGAAGCTTACCGAAATCACCAGATTTCCAATCTCTCTGGGTTTCAATTTGGAGAAGAGGATAATTCCGAGGTGTTGGGTTGGGAAAGTTCTGATGTTGAAGGGGTTGGTAAAGAAGGATCTGAGTTTAGGTGCCTTTTTGAGGTACACGGAGAGTAAGTTTTTGGACAGGTTTGTGATCAAATATCAGAATCACATTCCTCAGTTGTTAAATCTATATAAGGGTGAAGTGGGGCATTCTTTCACTGTGTCTTACCTCGTAAACTCATGTGGGTTGTCCCCAGAAACTGCTATTTCTGCATCCGAGAAGATACACTTTGAAAACCCTAAAAACCCAGATTCCGTTCTCGCTCTTCTCAGAAACTCGGGATGTACCAACACCCATATCACCAAAATTGTAACCAAGCTTCCTTCACTGCTCTTGGTCGATCCTGAGAAGACCCTTTTGCCCAAACTCGAATTTTTTTGTTCTATGGGCTTTTCTAGTGCTCGTGTTGCTAGCATGCTCTCTCCCGATCCAAGTCTCTTGGGTAGGAGCTTAGAAAAGGTTCTAATTCCCAAGTATAATTTCCTCAAGAGTGTACACATCAGTAATGAAGATGCCATAAAGGTTCTCAGGAGGTCATCCTGGAGTTCTAGTGGAAATCTGGAGAGGAACATAGCTGCCAATATTGCAGTTCTGAGAGAAACTGGAGTTCCCATATCCCGTATTTCATATTTAGTGACGCGTTATCACGCAATCTCCCTAAGAAGTGATAAATTCAGTGAAAATGTCAAGAAGGTTGTGGAAATGGGATTTAATCCTTTGAAATTTACTTTCCTGGATGCACTCCAAGCATTCTGTCAAACGACTGAATCAACTCGGCAACAAAAAATGGAGATGTATAGGAGGTGGGGTTGGTCTGAAGATGAGATTCTATCGGCATTCAGACGTCGTCCACAATGTATGCAATTGTCTGAGAAGAAAGTTAACAAGGTGTTGGATTTCCTTGTGAACAAAATGGGTTGGCAGCCTGCAGTTGTTGCTAGGGCTCCAGTAGCTATCTGCCTCAATTTTGAGAAGAGGGTTGTTCCAAGGTGTTCAGTGGTGAAAGTTCTGTTATTGAAAGGGTTGATAAAGAAGGATTTGAAGTTAGGTACTTTTCTGAATCTCCCTGTTGGGGATTTCTTGGATAAGTATGTAATCAAATATGAGGATGATATTCCTCAGTTACTAGATGTATATAAAGGGAAGGTGTTGAAGGAACTTCCGGTAGAAGGACGCATTGCTCTACTGCAGACCAAGTCCGATCAAGATTCAGAGCTATACGATTTTGAAATTGGTAAGAGCCTGAAGCTTCCTTTGCAAATGCGTCTTAAATTTATCTGTGAGAGACTAGGGTTAATCCCAAAATGGTGGCAGGCAGATTCCACGACCCAACTGCATTTTCTTCGAAATACAACTCCATTTATCATCAGATTGTTCTCGGCATCCAACCAGCATTCTTTTACTGTGTCTTACCTCGTAAAGTCATGTGGGTTGTCCCCAGAAACTGCTATTTCTGCATCCGAGAAGATACACTTTGAAAACCCTAAAAATCCAGATTCTGTTCTCGCTCTTCTCAGAGACTCTGGATGTACCAACACCCATATCGCCAAAATCGTAACCAAGCTTCCTTCACTGCTCTTGGTCAATCCTGAGAAGACCCTTTTGCCCAAACTCGAATTTTTTCGTTCTATGGGCCTTTCTAGTGCTGATCTTGCTAGCATCCTCTCTTCTGAGCCAAGTATCTTGAATAAGAGCTTAGAAAAGGTTCTAATTCCCAAGCATAATTTCCTCAAGAGTGTACATGTAAATAATGAAGGTGCCATGAAGATTCTCAAGAGGTCATCCTGGAGTTCTAGTGGAAAGACCATAGCTGCCAATATTGCTGTTCTGAGAGAAATTGGAGTTCCCATATCCCATATCTCATTTTTAGTGGTGCGTTATCACACAATCTGCCAAAAAAGTGATAAATTCAGTGAAAATGTCAAGAAGGTTGTGGAAATGGGATTTAATCCTTTGAAATTTACTTTCGTGAATGCACTCCAAGCATTCTGTCAAATGACTGAATCAACTCGGCAACAAAAAATGGAGATGTATAGGAGGTGGGGTTGGTCTGAAGATGAGATTGTGTCGGCATTCAGAAGTCGTCCACAATGTATGCAATTGTCTGAGAAGAAAGTTACCAAGGTGTTGGATTTCCTTGTGAACAAAATGGGTTGGCAGCCTGCAGTTGTTGCTAGGGCACCAGTAGCTATCTGCCTCAATTTTGAGAAGAGGGTTGTTCCAAGGTGTTCAGTGGTGAAAGTTCTGTTATTGAAAGGGTTGGTAAAGAAGGATTTGAGGTTAGATCATTTTCTGAGTCTCACTGAGGGGAATTTCTTGGATAAGTATGTAATCAAATATGAGGATGACATTCCTCAGTTGTTAGATCTATATCAAGGGAAGCTCAAAGCAGAAGAGCTTCAGAGCTTTCTTTTAAGCTTCAACATGGACGAGATTCCAACCACCAGCTGCAACCCTTGTCCCAAATGA 3501 0.4207 MRIRFSFRGLSSLPYPPPKWRITGKIFTTQLSLLQDGSLTFRFFSSSPTSRSANPKQCYFTVSYLINSCGLSPDSALSASQKLHLVTPERPDSILSLLRNYGITDTQLPKLIRVFPTLLLTDPEKTLLPKLEFLNSKPFSRADLGRVLSSCPMILSRSLDNQIIPCYNFFKSILHLDNRVVSAIKRSPRIFLEDVNKNIVPNITALQEIGVPESSIVFLITYYPIVVQLKHDRFGETVKKVMEMGFDPLTVVFIKAIQVFGGMSKSTWEQKMEVYRRWGWSNDEIVLLFRAFPACMSLSEKKIMSTMDFLVNKMGWKLTEITRFPISLGFNLEKRIIPRCWVGKVLMLKGLVKKDLSLGAFLRYTESKFLDRFVIKYQNHIPQLLNLYKGEVGHSFTVSYLVNSCGLSPETAISASEKIHFENPKNPDSVLALLRNSGCTNTHITKIVTKLPSLLLVDPEKTLLPKLEFFCSMGFSSARVASMLSPDPSLLGRSLEKVLIPKYNFLKSVHISNEDAIKVLRRSSWSSSGNLERNIAANIAVLRETGVPISRISYLVTRYHAISLRSDKFSENVKKVVEMGFNPLKFTFLDALQAFCQTTESTRQQKMEMYRRWGWSEDEILSAFRRRPQCMQLSEKKVNKVLDFLVNKMGWQPAVVARAPVAICLNFEKRVVPRCSVVKVLLLKGLIKKDLKLGTFLNLPVGDFLDKYVIKYEDDIPQLLDVYKGKVLKELPVEGRIALLQTKSDQDSELYDFEIGKSLKLPLQMRLKFICERLGLIPKWWQADSTTQLHFLRNTTPFIIRLFSASNQHSFTVSYLVKSCGLSPETAISASEKIHFENPKNPDSVLALLRDSGCTNTHIAKIVTKLPSLLLVNPEKTLLPKLEFFRSMGLSSADLASILSSEPSILNKSLEKVLIPKHNFLKSVHVNNEGAMKILKRSSWSSSGKTIAANIAVLREIGVPISHISFLVVRYHTICQKSDKFSENVKKVVEMGFNPLKFTFVNALQAFCQMTESTRQQKMEMYRRWGWSEDEIVSAFRSRPQCMQLSEKKVTKVLDFLVNKMGWQPAVVARAPVAICLNFEKRVVPRCSVVKVLLLKGLVKKDLRLDHFLSLTEGNFLDKYVIKYEDDIPQLLDLYQGKLKAEELQSFLLSFNMDEIPTTSCNPCPK* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0679 1166 PANTHER CGI-12 PROTEIN-RELATED 807 1125 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 FunFam Mitochondrial transcription termination factor-like 495 716 - -
Vvi7g0679 1166 FunFam Mitochondrial transcription termination factor-like 159 381 - -
Vvi7g0679 1166 Pfam mTERF 598 699 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Pfam mTERF 262 370 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Pfam mTERF 431 582 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Pfam mTERF 846 994 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Pfam mTERF 1009 1116 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Pfam mTERF 95 251 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 318 357 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 621 652 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 517 548 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 481 512 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 445 476 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 860 891 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 109 140 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 217 247 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 965 994 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 1033 1064 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 145 177 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 553 582 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 896 927 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 181 212 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 653 687 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 SMART mt_12 1065 1099 IPR003690 GO:0003690|GO:0006355
Vvi7g0679 1166 Gene3D Transcription termination factor 3, mitochondrial 161 382 IPR038538 -
Vvi7g0679 1166 Gene3D Transcription termination factor 3, mitochondrial 913 1128 IPR038538 -
Vvi7g0679 1166 Gene3D Transcription termination factor 3, mitochondrial 492 716 IPR038538 -
Vvi7g0679 1166 FunFam Mitochondrial transcription termination factor-like 910 1128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0679 Vvi-Chr7 6853647 6866884 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0679 mTERF 3.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0679 K15032 - vvi:104879853 1204.89