Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0678 ATGAGAATCCGCTTCAGCGTTAGAAGGGTATCGTTTCTGCTGCCCAATCCAACCCCAAATTGGAGGATTCCTGTGAAAAGCTTTATAACCCAACTCTCCCTTCTTCAAGATGCTCCACTGTCATTCAGATTCTTCTCTTCATCGTCAACATCCCCATCCTCCCCAAATCCCAAACAAAGCTCTTTTACAGTGTCTTACCTCATCAATTCATGTGGGTTGTCCGCAGATTCTGCTCTCTCCGCTTCCCAAAAGCTTCACTTGGTAACCCCAGAAAGGCCCGACTCTGTCCTCACACTCCTCAGAAACTATGGAATCACCGACACCCAACTTCCCAAACTCCTACGAGTATATCCAACTTTGCTTTTGGCTGATCCTGAGAAAACCCTTTTGCCCAAACTCGAGTTTTTCCATTCTAAAGCTTTTACAAGGGCCGACCTTGGGAGCATCCTCTCTTCCTGTCCAATGATCTTGTCGCGGAGCTTGGACTACCAGATCATCCCTTGTTATGATTTTTTAAAGAGCATTCTTCATCTCGATAAAAGGGTTGTTTCTGCATTCAAGCGCTCACCCAGGATTTTTCTTGAGGATGTGAACAAGTACATCGTTCCAAAAATCACAGCCTTGCAAGAAATTGGAGTGCCTGAATCCTCTGTCGTGTTTTTGATTACTCATTATTCCAATGTAGTGCAGGTAAAGCACGACAAGTTTCACGAAATTGTAAAGGAGGTTATGGAAATGGGATTCGATCCTCTGAAAATGGTTTTCATTAAGGCAATCCACGTGCTTGCTGGAATGAGTAAACCAACCTGGGAACATAAAATGGAGGTTTACAGGAGGTGGGGTTTGAGCAATCATGAGATAATGTTGTTGTTCAGAGCTTTTCCCATATGTATGAGTTTATCTGAGAAGAAAATAATGAGCACAATGGATTTCCTGGTTAATAAGATGGGTTGGAAGCTTACCGCAATCACCAAAGTTCCAAGCACTCTGAGTTACAGTTTGGAGAAGAGGATCATTCCGAGGTGTTCAGTTGCGAGAGTTCTGATACTGAAGGGGTTGGTAAAGAAGGACATGGGCTTAGGTGCTTTTCTGAGGTTCACTGAGAAGAAGTTTTTGGATAGGTTTGTGATCAAATATCAGAATCACATTCCTCAGTTGTTAAATCTATTTAAGGGTGAAGTGGGCATTCTAGAACTAGGCTTTGCATCTGAGGAGATATGTGGAGTCAAACAGTTGTAG 1239 0.431 MRIRFSVRRVSFLLPNPTPNWRIPVKSFITQLSLLQDAPLSFRFFSSSSTSPSSPNPKQSSFTVSYLINSCGLSADSALSASQKLHLVTPERPDSVLTLLRNYGITDTQLPKLLRVYPTLLLADPEKTLLPKLEFFHSKAFTRADLGSILSSCPMILSRSLDYQIIPCYDFLKSILHLDKRVVSAFKRSPRIFLEDVNKYIVPKITALQEIGVPESSVVFLITHYSNVVQVKHDKFHEIVKEVMEMGFDPLKMVFIKAIHVLAGMSKPTWEHKMEVYRRWGLSNHEIMLLFRAFPICMSLSEKKIMSTMDFLVNKMGWKLTAITKVPSTLSYSLEKRIIPRCSVARVLILKGLVKKDMGLGAFLRFTEKKFLDRFVIKYQNHIPQLLNLFKGEVGILELGFASEEICGVKQL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0678 412 PANTHER CGI-12 PROTEIN-RELATED 58 379 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 FunFam Mitochondrial transcription termination factor-like 161 383 - -
Vvi7g0678 412 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 253 283 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 SMART mt_12 147 179 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 Gene3D Transcription termination factor 3, mitochondrial 179 385 IPR038538 -
Vvi7g0678 412 Pfam mTERF 262 372 IPR003690 GO:0003690|GO:0006355
Vvi7g0678 412 Pfam mTERF 97 249 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0678 Vvi-Chr7 6850002 6851240 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi7g0678 mTERF 8.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0678 K15032 - vvi:100263451 792.727