Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0676 ATGAGGAGTAAGAAGAACCGGCTCAAGGAGCGGAGGGGTGGTATAAGACGGAGGGTGGAGAAGATAATGAAGTGCCTCTGCTCTGGAGAGGAATTAAGAGCAGATAAAATGATTCCTTTGTCTGAAATCCTTGCAACCAACGATTATTCAGCAAGTGGCAGTTCTTCTCGAGCTGCTGAGCTTGAGCAGAAGCAAGATATCGGTAATATTGAAGAAGCTGAATCATCTCTCCGTGAGAGTGGTTGTTTAAACTACGAGGAAGCAAGAGCATTGTTAGGGAGATACGAATATCAAAAAGGGAACATAGAAGCTGCTCTGCATGTATTTGAAGGAATAGATATTGCTGCAGTGACTCCCAAGATGAAACTCACCCTCGCTAAGAGAGGAGAACGTCGTAGGAGACGCTCTCAAAGTGATGCTGCCCCACCTATGTCCATACATGCTGTTAGTTTACTCTTGGAAGCAATCTTTCTTAAAGCAAAGTCATTGCAGGGTCTTGGAAGGTTTAAAGAAGCTGCTCAATCATGCAACGTTATTCTGGACATTGTTGAATCTTCATTACCAGAAGGCTTGCATGTAAACTTTGGTTCTGACTGTAAATTGCAGGAGACTTTAAATAAGGCCATTGAGTTGCTTCCAGAATTATGGAAACTTGCTGATTCTCCTCATGAAGCAATTTTGTCATACCGACGAGCCCTTCTACATGCTTGGAACATTGATGTGGAAACTAATGCAAAAATCCAAAAAGAGTTTGCTATTTTTCTTCTATACAGTGGAGGTGAAGCAAGCCCCCCGGAGCTCCGTTCCCAAATGGATAGTTCATTTGTACCTAGAAACAACATAGAAGAGGCTATTCTTCTATTAATAATTCTATTAAGAAAAATTTCTCTTGAAAAAATTGAGTGGGACCCATCAATCTTGGATCACCTCTCCTATGCTCTGTCTCTGTCAGGGGGACTAAGGGCTTTAGCCAATCAAGTAGAAGAATTGCTTCCTGGGACCATGAATCGAAAAGAAAGGTATCACACTCTAGCACTCTGTTATTATGGAGATGGTGATAGCTTGACTGCTTTGAATTTGTTGAAGAAACTATTGAGTAATGCGGAGAATCCAAACTATCTTCCAGCTTTATTAATGGCTTCAAAGATTTGTGGGGAAAACCCAAATTTTGCAGAAGAAGGGATCAGCTTTGCCCGCAGAGCCCTGCAAAGCTTGCAGGGAGGGTGTGAAGAGATGGGAAGTGTTGCCAACTGTTTATTGGGTATTTCACTTTCTGCACATTCCAAATCAGTTGTGGCTGACTCTGAGAGGGTTTCAAGACAAGCTGAGGCACTTCATGCCCTGGAAACAGCTGGGCGAATGATTAAAGTAAGAGATCCCAAAGTTGTTTACCATCTCAGCCTAGAAAATGCTGAGCAGAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTACTTCATAAAACTTGAAGGTGGGTCTTCAGTTAAAGGATGGTTATTGTTGACTCGGATATTATCAGCTCAAAAACGGTTCAAGGATGCTGAAGCTGTCATTAATGCTGCCATTGATCAGACTGGCAAATGGGATCAGGGAGAATTGTTAAGAACTAAAGCTAAACTCCAAATTGCACGTGGACGGTTAAAGCAAGCAGTTGAGACATATACTCATCTTCTTGCTGTTCTTCAGGTTCAGAGAAAAAGCTTTGGGTCTGGGAATAAGTTTCTCAAGGGCAGTGGATATCCTGATAGAAGTTTGGAATTGGATGCATGGCATGATCTGGCTTATTTATACATAAGCTTGTCACGGTGGCATGAGGCTGAGATCTGTCTTTCCAAATCCCGGGCCATCAGTCCTTATTCTGCTGCTAGATGTCATGCAATGGGTTTACTTTATGAAAAGCAAGGCCTCCACAAAGAAGCTCTAAAAGCCTTTGCAAATGGTTTAGATATTGAACCCACCCACATACCCTGCCTGATCTCCATTGCCGTGGTTCTCAGGCACCTCGGCACCCAATCAGATGCAGTTGTTAGAAGCTTTCTGACACAAGCACTGCAGCTTGACAGAATGAACCCTTCTGCATGGTATAATCTTGGCCTGGTTTACAAAGCCCAGGGTGCTGCATCATTACAAGAAGCTGCTGAATGTTTCGAGGCTGCAGCCCTTCTTGAAGAGTCGACACCAGTTGAGCCCTTCAGATGA 2199 0.432 MRSKKNRLKERRGGIRRRVEKIMKCLCSGEELRADKMIPLSEILATNDYSASGSSSRAAELEQKQDIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDIAAVTPKMKLTLAKRGERRRRRSQSDAAPPMSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQETLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEASPPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRALANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKICGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAEALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTRILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQVQRKSFGSGNKFLKGSGYPDRSLELDAWHDLAYLYISLSRWHEAEICLSKSRAISPYSAARCHAMGLLYEKQGLHKEALKAFANGLDIEPTHIPCLISIAVVLRHLGTQSDAVVRSFLTQALQLDRMNPSAWYNLGLVYKAQGAASLQEAAECFEAAALLEESTPVEPFR* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0676 732 PANTHER PROTEIN NPG1 23 732 IPR043376 -
Vvi7g0676 732 SUPERFAMILY TPR-like 337 561 IPR011990 GO:0005515
Vvi7g0676 732 Pfam Tetratricopeptide repeat 623 654 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 531 564 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 621 654 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 691 726 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 338 371 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 587 620 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 153 186 IPR019734 GO:0005515
Vvi7g0676 732 SMART tpr_5 495 528 IPR019734 GO:0005515
Vvi7g0676 732 Gene3D Tetratricopeptide repeat domain 40 567 IPR011990 GO:0005515
Vvi7g0676 732 Pfam TPR repeat 682 705 - -
Vvi7g0676 732 Gene3D Tetratricopeptide repeat domain 572 727 IPR011990 GO:0005515
Vvi7g0676 732 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Vvi7g0676 732 SUPERFAMILY TPR-like 532 722 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0676 Vvi-Chr7 6832954 6838269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0676 15 732 Calmodulin-binding Proteins AT4G28600 58.152 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0676 K21843 - vvi:100258327 1368.99