Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0659 ATGGCGGAAGAAGAGGATAGAATTCTATTAAGCAGTTTGGGCGTAACTTCCGCTAATCCTGAGGATGTTGAACGTGAAATATTGGCAGCGGCTACAAATGAGGCTGAAAATGGTAGTGAAGCTGGAAGGAGTACTGAGGAAGAATTTCTTGACAAATCTAAGGCAACTGAACTATCATCTACCAGCCAAGCAAAACTCTATAGTAAATTGAGGGCATTAGAAGTTGAAATAGATGCTGTTGCATATACTGTTCAACAGGCAAGGAATACTGAAAGAAATGAAAATCATGTCTCGCATGGTAATGATAACAGGGCACAAGGAGATGCAGAGGATGATAAACTTGTTATTCAGGCTTCTCCCAATAATTTAACCCTTCAGCATGCCCTAGCTGCTGATCGTCTAAGAAGCCTCAAGAAAACAAAAGCTCAACTTGAAATAGAGCTTTCAGATTGGCAAAAGGAAAAGCCTTCCAAGACTGTTGAGCATGACAAGGTGATACAAAATCTGGTTAAGGAAGAGGCAAGACCCAAGAAAAGGTTAAAAGAAATTCCGAAATCGGGCAAAGATTTAAAGAAGCGAAAGAAAACAATTTCATTTGATGATGATGTTGATTTTGATGCAGTCCTGGATGCAGCTTCTGCAGGATTTGTCGAAACTGAAAGAGACAAGTTGGTTAGAAAAGGGATTTTAACTCCTTTCCATAAGCTCAAAGGCTTTGAACGTCGTCTTCAACAACCAGGTCCATCTAGTAGAGACAATTTACCCGAGGAAGGAGATAAGATTGATGATCTTGCTTCTGCTAGTATTGCCAGAGCTGTTCAGTCAATATCTGAATCTGCACAAGCTCGCCCAACAACCAAGCTGCTTGATTCGGAAACTCTGCCAAAGCTTGATGCACCCTCTCATCCTTTTCACAGGTTGAAAAAACCTCTGAAATACCCTCTGCCCTTGGACAGTGAGGTGGAGAAGAATAAAGATAAAAAAAGGAAAAAGAAAAGGCCTTTACCTAGCAAGAAATGGAGAAAGATTATTTCTCATGAGGAAGAGCTTTTGGAAGAAAGTGAAGATACAAGTGACAACTTGGTGACCTCCAGTAATGAAGAAGTAAACCGAGAAGATATTGAAGATGCAGATGATAATGAACCCCCTTGTGTGACACTTGAAGGTGGTCTGAGGATACCTGAAAGCATTTTCAGCAAACTTTTTGATTATCAAAAGGTGGGGGTTCAGTGGCTGTGGGAACTGCATTGCCAACAAGTAGGTGGAATTATTGGAGATGAGATGGGACTTGGCAAGACCATCCAGGTATTATCTTTCCTTGGAGCATTGCATTTCAGTAATATGTATAAACCAAGTATTGTTATCTGCCCTGTTACACTCTTGCGACAATGGAAAAGGGAAGCCAAAAAATGGTACCAAAGTTTTCATGTGGAAATACTGCATGATTCTGCTCAAGATCCTGCTAGTAGAAAGAAACGAGCCAAATCTTATGAAAGTGAAGATTCACTTGACAGTGATGATGAAGAAAATTTATCTTCTAAGGACACCAAAAAATGGGATTCCTTGATAAACCGTGTTTTGAGGTCACAGAGTGGATTACTTATTACTACTTATGAGCAAATCCGGCTGCAGGCTGGAAAGCTACTTGATATCAAATGGGGTTATGCAATTTTAGATGAAGGACACCGAATTCGGAATCCAAATGCTGAAGTTACCATACTTTGTAAACAGTTACAGACTGTTCATCGTATAATAATGACTGGTGCGCCAATTCAGAACAAGCTGGCTGAGCTGTGGTCTTTGTTTGATTTTGTCTTCCCTGGGAAGTTGGGAGTGTTGCCTGTATTTGAAGCAGAATTTGCAGTTCCCATATCTGTTGGTGGCTATGCCAATGCTACTCCATTACAAGTATCCACCGCTTACAGGTGTGCAGTCGTCCTACGTGACTTGATTATGCCATACCTCCTTCGACGTATGAAAGCTGATGTGAATGCTCAGCTTCCAAACAAGACTGAACATGTCCTCTTTTGCAGCCTTACCACAGAGCAGCGTTCTGTATATCGAGCATTTCTTGCAAGTTCAGAGGTGGAACAGATCTTTGATGGTAGTAGAAATTCTCTTTATGGCATTGATGTGATGCGTAAAATATGCAATCACCCTGATCTGCTTGAGCGAGAGCATGCTTACCAGAATCCAGATTATGGGAATCCTGAACGCAGTGGAAAAATGAAAGTTGTTGCCCATGTGCTTAAGGGGTGGAAAGAACAGGGTCACCGCGTTCTTCTTTTTGCACAAACTCAACAAATGCTTGATATTCTTGAGAATTTCCTGATTGCTGGTGGCTATGTCTACAGGAGAATGGATGGTTTCACTCCCATAAAACACAGAATGGCATTGATTGACGAATTTAATGACTCTGATGATGTATTCATTTTCATTCTCACTACAAAGGTTGGTGGTTTGGGGACAAATCTTACTGGAGCCAACAGGGTAATCATTTATGACCCTGATTGGAACCCATCAACTGATATGCAGGCTAGGGAGCGTGCTTGGCGCATTGGTCAGACGCGGGATGTAACGGTTTATAGATTGATCACCCGTGGGACTATAGAGGAGAAGGTATATCAACGACAGATATACAAACATTTTCTCACCAATAAAATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCTCGAGATATGAAGGATCTCTTTGTTTTAAATGATGATGGAGAGGATGCATCAACTGAAACATCAAATATTTTCAGTCAGTTATCTGAAGATGTAAATGTGGTTGGGAAGCATAAAGATAGCCAGGATAAGCAGAAATCTATTATTCCAGTGTCGTCACATGCATGTGGTGCAGTCGATGAAGGAAACAACTCAACAATTGGACCATCCAGAAGTGGGGAGAATGAAAAAGATGATCAGAGCGATGAAATGGACAAAGAAACAAATATTTTGAGGAGTCTTTTTGACGCCCATCGGTTACATAGTGCCGTGAACCATGATGCAATTATGAATGCCCATGGTGATGAGAAGATGAGGCTTGAGGAGGAAGCTTCCCGAGTTGCAAAAAGAGCATCGGAAGCATTACGCCAGTCACAAATGCTTCGAAGCCGTGAAAGTATATCTGTCCCAACATGGACTGGAAGGTCAGGAGCTGCAGGTGCCCCATCATCTGTTTCCCGGAAATTTGGCTCAACTGTAAGCTCCCAGTTGATTAATAGATCAAAATCATCAGAAGAATCATCCAGCAATGGAATGAGCAAGCCAAATGGCATTGCAGCCGGGGCTTCTGCTGGTAAGGCTTTATCTTCAGCAGAATTACTGGCTAGAATTCGAGGGAACCAAGAAAGAGCAACTGATGATGGGCTTGAACATCAGTTAGGCTCGAGTTCTGCAAATAGAGCAAGATCTACAGATAGTGGGCCTTCTAGTTCTAGGTCAACTCACAACCTCTCAAGTGTGCAGCCTGAGGTATTGATTCGTAAAATTTGTACATTTATACAGCAAAAAGGCGGAAGCACCAATTCAACCAGCATAGTGCAGCATTTTAAGGACAGGATACCATCGAAGGATCTGCCGTTATTTAAGAATCTTTTAAAGGAAATAGCCACCCTAGAGAAAGACCCAAATGGATCTTCTTGGGTGCTAAAGCCTGAGTATCGATTATAG 3684 0.4169 MAEEEDRILLSSLGVTSANPEDVEREILAAATNEAENGSEAGRSTEEEFLDKSKATELSSTSQAKLYSKLRALEVEIDAVAYTVQQARNTERNENHVSHGNDNRAQGDAEDDKLVIQASPNNLTLQHALAADRLRSLKKTKAQLEIELSDWQKEKPSKTVEHDKVIQNLVKEEARPKKRLKEIPKSGKDLKKRKKTISFDDDVDFDAVLDAASAGFVETERDKLVRKGILTPFHKLKGFERRLQQPGPSSRDNLPEEGDKIDDLASASIARAVQSISESAQARPTTKLLDSETLPKLDAPSHPFHRLKKPLKYPLPLDSEVEKNKDKKRKKKRPLPSKKWRKIISHEEELLEESEDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDYQKVGVQWLWELHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAKKWYQSFHVEILHDSAQDPASRKKRAKSYESEDSLDSDDEENLSSKDTKKWDSLINRVLRSQSGLLITTYEQIRLQAGKLLDIKWGYAILDEGHRIRNPNAEVTILCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTTEQRSVYRAFLASSEVEQIFDGSRNSLYGIDVMRKICNHPDLLEREHAYQNPDYGNPERSGKMKVVAHVLKGWKEQGHRVLLFAQTQQMLDILENFLIAGGYVYRRMDGFTPIKHRMALIDEFNDSDDVFIFILTTKVGGLGTNLTGANRVIIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDSQDKQKSIIPVSSHACGAVDEGNNSTIGPSRSGENEKDDQSDEMDKETNILRSLFDAHRLHSAVNHDAIMNAHGDEKMRLEEEASRVAKRASEALRQSQMLRSRESISVPTWTGRSGAAGAPSSVSRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAGASAGKALSSAELLARIRGNQERATDDGLEHQLGSSSANRARSTDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKDLPLFKNLLKEIATLEKDPNGSSWVLKPEYRL* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0659 1227 CDD SF2_C_SNF 740 865 - -
Vvi7g0659 1227 SMART helicmild6 771 854 IPR001650 -
Vvi7g0659 1227 FunFam Protein CHROMATIN REMODELING 8 379 657 - -
Vvi7g0659 1227 Gene3D - 664 949 IPR027417 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 1035 1095 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 88 108 - -
Vvi7g0659 1227 Coils Coil 127 154 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 1121 1157 - -
Vvi7g0659 1227 SMART ultradead3 397 625 IPR014001 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 1 58 - -
Vvi7g0659 1227 PANTHER SNF2/RAD54 FAMILY MEMBER 113 1209 - -
Vvi7g0659 1227 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 904 IPR001650 -
Vvi7g0659 1227 CDD CSB_WHD 1157 1226 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 351 383 - -
Vvi7g0659 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 915 IPR027417 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 92 108 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 490 512 - -
Vvi7g0659 1227 Pfam Helicase conserved C-terminal domain 750 854 IPR001650 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 275 338 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 40 54 - -
Vvi7g0659 1227 Pfam SNF2-related domain 404 722 IPR000330 GO:0005524|GO:0140658
Vvi7g0659 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 658 IPR027417 -
Vvi7g0659 1227 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 608 IPR014001 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 299 325 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 1029 1099 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 239 259 - -
Vvi7g0659 1227 Coils Coil 1016 1036 - -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 936 984 - -
Vvi7g0659 1227 CDD DEXHc_ERCC6 401 607 - -
Vvi7g0659 1227 FunFam DNA excision repair protein ERCC-6 665 944 - -
Vvi7g0659 1227 Gene3D - 365 657 IPR038718 -
Vvi7g0659 1227 MobiDBLite consensus disorder prediction 1129 1157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0659 Vvi-Chr7 6562398 6568962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0659 697 907 RAD5 or RAD16-like Gene Family AT5G22750 30.374 3.04e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi7g0659 SNF2_N 1.1e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0659 K10841 - vvi:100253251 2333.52