Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g0654 ATGGGTTTAAGGGACATAGGAGCCACACTGCCTCCTGGGTTTAGGTTTTATCCCAGTGATGAGGAGCTGGTATGCCATTACCTCTACAAAAAGATAACAAATGAAGATGTTTTGAAGGGTACTTTGGTGGAGATTGATTTGCATATTTGTGAGCCATGGCAGCTTCCTGATGTGGCTAAGCTCAACTCAACTGAGTGGTACTTCTTCAGCTTTAGGGACAGGAAGTATGCGACGGGCTACCGAACCAACAGGGCTACAACATCTGGATACTGGAAAGCCACAGGAAAGGATCGACCCGTGCTCAACCCGACAACCCATGAGGTGGTGGGCATGAGGAAGACATTAGTCTTCTACCGAAACCGAGCTCCAAATGGCATCAAAACCGGTTGGATCATGCATGAATTTCGGCTGGAGACCCCACATATGCCCCCTAAGGAGGACTGGGTGTTATGCAGAGTCTTTCACAAGACCAAGTCAGAGAGCAGCTCCAAGCTAAGCCCCCAATATGTGTTTGACACTACAGCCAGTGCCTCTTCTCCACCAACTCATGATCAAACCCTACCATGTGGGTACCAGCAAATACCCTCATTCTCCCCAACCCACCCCCACCAAAACCATGACCAAACCACACTGCTAAACCTAGCAGTCCTAAACCCCAATCTTGTCCACTTCGCCTCTCAGGAGATGAATCCATGCGCTGCAGCCAATGAAATCAACTCCAAAGGTAGTGGTGCTGATGAGTATGGGTTCTTGTGGGACATGAGCTGCAGCCTGGGAGATGGGGTGCCTTCATCAAATCTGGAGGACATGAGATTTGAAGAGAACAACAGTATAGTTTTCCTATGA 846 0.4882 MGLRDIGATLPPGFRFYPSDEELVCHYLYKKITNEDVLKGTLVEIDLHICEPWQLPDVAKLNSTEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRPVLNPTTHEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKTKSESSSKLSPQYVFDTTASASSPPTHDQTLPCGYQQIPSFSPTHPHQNHDQTTLLNLAVLNPNLVHFASQEMNPCAAANEINSKGSGADEYGFLWDMSCSLGDGVPSSNLEDMRFEENNSIVFL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g0654 281 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vvi7g0654 281 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vvi7g0654 281 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vvi7g0654 281 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vvi7g0654 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi7g0654 Vvi-Chr7 6501704 6504588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi7g0654 6 245 NAC Transcription Factor Family AT1G56010 47.244 3.66e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi7g0654 NAM 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g0654 - - vvi:100254997 589.726